Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00013 ATGAAGCTCACAGTCAAAACCTTGAAAGGCAGTCACTTTCAAGTTGAAGTTCAGCCCTCTCAGACTGTTATGGCTGTGAAGAAAAACATTGAAGATGTTCAAGGAAAGGAACTTTATCCTTGTGGACAGCAACTATTGATTCATAATGGCAAGGTCCTGAAAGACGAGACAACACTAGCAGATAACAAAGTCACAGAAGATGGTTTTCTTGTTGTAATGCTCAGCAAGAGTAAATCCTTAGGTTCGGCAGGGCCCTCATCAAATCAGGCTGCGAGTAATCCACCTACAACTGCACCAAGTCTCAGTTCTACTCAAACACCTGAGGCTTCAGTACAAACTCTAGGAGTCAGTGCTCTTTCCGATTCTTATGGCCAAGCTGCTTCAAATTTAGTGTCCGGTAGTAATCTTGAGCCAACAGTTCAGCAAATCATGGATATGGGTGGTGGAAGTTGGGATAGAGAAACAGTTGCTCGTGCACTTCATGCAGCTTATAATAATCCTGAGCGTGCTGTAGACTACTTGTATTCTGGAATTCCTGAAACTGCAGAAGTTTCTGTACCTGATGCAAGACCTCCTGCCACTCAGGCAACTGAAGCAGGTGCAGTGCCTGCTGGATCAGTGTTTGGGGCACCTAATACATCTCCGTTCAATATGTTTCCTCAGGAAGCACCATCTGGTGATGCAGCTGGACCTGGATCTCTTGACTTTCTCCGAGACAATCCACAGTTTCAAGCATTGCGGGCGATGGTACAAGCAAATCCCCAAATCTTGCAGCCTATGCTTCAGGAGCTTGGAAAGCAGAACCCCAATCTCTTAAGATTAATTCAGCGGCACCAGGCAGAGTTCCTCCAGTTGATAAATGAGCCTGTTGAGGTTTCTGAAAGGTTAGTAAAATATGACCAGCCTGATCAGGAGATGCCTCATGCCATCAGTGTTACACCTGCTGAACAGGAGGCTATTGAAAGGCTGGAGAATATGGGATTCGATAGAGCCTTAGTTATCGAAGCATTTTTAGCTTGTGACCGCAATGAAGAATTGGCTGCCAACTACCTCTTGGAGAATGCCGGAGATTTTGAAGATTGA 1083 0.4524 MKLTVKTLKGSHFQVEVQPSQTVMAVKKNIEDVQGKELYPCGQQLLIHNGKVLKDETTLADNKVTEDGFLVVMLSKSKSLGSAGPSSNQAASNPPTTAPSLSSTQTPEASVQTLGVSALSDSYGQAASNLVSGSNLEPTVQQIMDMGGGSWDRETVARALHAAYNNPERAVDYLYSGIPETAEVSVPDARPPATQATEAGAVPAGSVFGAPNTSPFNMFPQEAPSGDAAGPGSLDFLRDNPQFQALRAMVQANPQILQPMLQELGKQNPNLLRLIQRHQAEFLQLINEPVEVSERLVKYDQPDQEMPHAISVTPAEQEAIERLENMGFDRALVIEAFLACDRNEELAANYLLENAGDFED* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00013 360 FunFam UV excision repair protein RAD23 homolog 129 179 - -
Pte19g00013 360 Pfam XPC-binding domain 234 289 IPR015360 GO:0003684|GO:0006289|GO:0043161
Pte19g00013 360 Gene3D - 307 355 - -
Pte19g00013 360 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 134 177 IPR015940 -
Pte19g00013 360 SUPERFAMILY XPC-binding domain 231 292 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pte19g00013 360 Gene3D - 129 179 - -
Pte19g00013 360 MobiDBLite consensus disorder prediction 81 113 - -
Pte19g00013 360 SUPERFAMILY UBA-like 296 357 IPR009060 GO:0005515
Pte19g00013 360 Coils Coil 261 281 - -
Pte19g00013 360 CDD Ubl_Rad23 1 74 - -
Pte19g00013 360 SUPERFAMILY UBA-like 132 189 IPR009060 GO:0005515
Pte19g00013 360 Gene3D - 1 80 - -
Pte19g00013 360 SMART CBM 230 275 IPR006636 -
Pte19g00013 360 NCBIfam UV excision repair protein Rad23 1 359 IPR004806 GO:0006289
Pte19g00013 360 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 349 - -
Pte19g00013 360 Gene3D - 224 290 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pte19g00013 360 SMART ubq_7 1 75 IPR000626 GO:0005515
Pte19g00013 360 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Pte19g00013 360 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Pte19g00013 360 FunFam UV excision repair protein RAD23 homolog 307 355 - -
Pte19g00013 360 SUPERFAMILY Ubiquitin-like 1 83 IPR029071 -
Pte19g00013 360 FunFam UV excision repair protein RAD23 B 224 290 - -
Pte19g00013 360 PRINTS DNA repair protein Rad23 signature 327 341 IPR004806 GO:0006289
Pte19g00013 360 PRINTS DNA repair protein Rad23 signature 260 282 IPR004806 GO:0006289
Pte19g00013 360 PRINTS DNA repair protein Rad23 signature 310 326 IPR004806 GO:0006289
Pte19g00013 360 PRINTS DNA repair protein Rad23 signature 342 357 IPR004806 GO:0006289
Pte19g00013 360 SMART uba_6 136 176 IPR015940 -
Pte19g00013 360 SMART uba_6 316 353 IPR015940 -
Pte19g00013 360 FunFam UV excision repair protein RAD23 1 80 - -
Pte19g00013 360 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 314 354 IPR015940 -
Pte19g00013 360 Pfam UBA/TS-N domain 316 351 IPR015940 -
Pte19g00013 360 Pfam UBA/TS-N domain 139 174 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00013 Pte-Chr19 240161 243571 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00013 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 1.55e-06 45.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g00013 19 240161 243571 Pte19g00013 19 240161 243571 RCT