Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g02135 ATGGGAACAGAGCTCATGAGAATGTGCATGAAAGAAGATAACGATGACTTCCTATCTGTTCCACCTGGCTTCGAATCATTTTCCTCTTTCTCATTCAAGAGGGTAGAACACACAGAGAAAGAAGATGATAAAAGCATGATTACTTGCTCAGCTTCGACAAGTATCTCTGAAGCACAGTCAGTTAAATCTGAAACGGGTGGCCAGGGTAGTGATGATGCCAAGAATCATAGGTCTCTTCGACGCAAGCCTTCGATTAATTATGGACAATATGATTATTGTTTGGAGGAAGAGTCTGATTCTGAGCGGCATGATCGAAATTTTCACTCCAGGCCATGTCTTCCCAAGGGGGTTATCCGAGGGTGTCCTGAATGCAATAATTGCCAAAAGATTGTTGCACAATGGCAACCAGAAAATGCTCGGAGGCCAAACTTGGAGGATGCCCCCACTTTCTTTCCAACAGAAGAGGAATTTGAAGACACTTTGAGTTACATATCAAGCATTCGTGAGAGAGCTGAGCCATATGGAATCTGTAGAATTGTTCCTCCTCCTTCCTGGAGACCTCCTTGTCCTCTCAAGGAGAAGAATATGTGGGAGCATTCCACATTTGCTACTCGAGTTCAGAGGATTGACAAACTTCAAAATCGAGATTCAATGAAAAAGTTGTCAATGTCACGTAATAATATGAGGAGGAAAAAAAGAAGATGCATAAGAATGGGTATTGAATGTGGAATTGGCGGAGCATTTGATGCCAAAAACTTAGAGGCTGAAAGGTTTGGATTTGAACCTGGTCCAGATTTTACCCTAGGAATGTTTGAAAGATATGCAGGTGACTTCAAGGCCAGATATTTTGGAAAGAATGAAAACTTTTCTGATATTGCTGACAATGTAACCACACCTAAAGATACCTGGGAGCCCTCTCTGGAGGATCTTGAAGGGGAATACTGGCGAATGGTAGAAAATCCTACTGAAGAGATAGAGGTTCTATATGGAGCAGATCTGGAAACTGGGGTTTTTGGTAGTGGATTTCCTAGACACTCTGGTGAACTCAGTTCTGCTACAGATGATAAGTACTTAAAATCAGGCTGGAATTTGAACAACTTTCCGAGGCTTCGAGGATCTGTGCTTTCTTATGAAAGCAGTGATATCTCTGGTGTTCTAGTGCCATGGTTGTACATAGGGATGTGTTTTTCCTCATTCTGTTGGCATGTCGAAGACCATCATCTATATTCTCTAAACTACATGCACTGGGGTGCTCCAAAAATATGGTATGGAGTTCCTGGAAAGGAGGCCTGCAAATTAGAGGAGGTTATGAAAAAGCATTTGCCTGACCTTTTTGAAGAACAACCTGACCTGCTTCATAAGCTGGTTACTCAGCTCTCACCATCCATACTTAAATCTGATGGCGTTCCTGTCTATAGGTGTGTGCAAAATCCTGGGGAGTTTGTGTTGACTTTCCCTAGGGCATATCATTCAGGATTCAACTGTGGCTTCAACTGCGCTGAGGCAGTTAATGTAGCTCCAGTTGATTGGCTGCCTTATGGCATGATTGCCGTCGAGCTTTACCGAGAACAGGGGCGCAGGACATCTCTATCTCATGATAAGCTATTGCTTGGGGCTGCTAGGGATGCAGTAAGAGCACACTGGGAACTGAATTTACTGAAGAAGAATACGCTGGATAACTTAAGATGGAAAAATTTTTGTGGAAAAGATGGAATTTTGGCTAAAGCACTGAAGGCACGTGTAGAGATGGAACTTGTAAGCAGGGAATTCTTTAGAAGTTCTTCTCAAGCTTTAAAGATGGACAGCAGTTTTGATGCCAACAATGAAAGGGAATGCAGTGTCTGTCTTTTTGACTTGCACCTTTCAGCTGCTGGTTGTCATTGTTGTCCTGAACGATATGCTTGTTTAAGTCATGCACAGCAATTTTGTTCATGTGCTTGGGATTCCAAATTTTTCCTTTTTCGTTACAATGTCAGTGAACTAAATATCCTTGTAGAGGCTTTGGAAGGAAAACTAAGTGCAGTTTATAGGTGGGCAAGACTGGATCTTGGACTGGCACTCACTTCTTACATCTCCAGGGATCATAGACAATTTGGGAGTGTGTCCAAATCTTCCGAAGAAACGACGGTTAAAGAATCAAGGTCAAACAATTCAGCATCACCTTATTCTTCTCATTGCACTGTTCAGAAACCAGACTCCCCGCTTCCCTCTAGTGTGTCCATCAAAGATCATCAACAGGTGCATATTTCAAAAGAGATTGCAGCAATTTCAAAAAGGAAACCTGATAAAAGCTCTGAAAGTCAAGCAAAAGTTGTATCGCTTACTAAGACTGTCTTAGCTAACAAAAATTCTCATGCTAAGAAAGAAGAATCTGCTAGTTCAACTTCTAACTTAAGACCGCCAGTGTGCCAGTTTTCTCAGACTGCATCATGTTCTTCGTCTCCTGCTGTTGATCAACCTGAATGGAAGAAGGGTTCTGGTTCTGGACTTGAAAATGTTATACATCTTAGTGATGATGAAGGAGAGGAGGCAAAGTTGTTGGTGTCTGATGCAAAGATGGAACCTTCGGAGAGGGTTACAGGTTCTAATGATAAATCAAAACCTCTTAATAATGAACAGGCAATCTTGACTGCCCCTGTGAAATGTGCAGCACCGATGGGTGAAAAAAATGCCGTTTCGTTACCTGATGAAAAAATGAATTCAATATCAACTGATCCTGTAAATAAGGAACTGCACCAAGGAATTACTCCACCAGATGTTTCCAGCAACGTAGGAAGTGTCACTGCTGAACCTGGAAGACACATGGAGGTTTCAACAAGAGAATCTAGCGATCCTAGAAAGAAGACGTCTGAGAATGGCCCTCAGAATGCACCACGAGCGAGCTACATGAGACCTTACATGGAGGATAGGAATGAAAAATCGGGAGTTTGTGCCAATTCTAATTTAGTGGAAATTGTAAAGTTTAGTGCAGATGCATCATGCTCTAACAGTATGGACAGAAATCATCGTCAAGGCCTTCGAATTGCAAGAGTTATACGGAGGGTCAATCATACAGTTGAGCCTATTGAATGTGGGTTTGTGCTTTCTGGAAATCCATGGTGCAACAACCAAGCTATATATCCCAAAGGATTTAAAAGTCGTGTTCGGTACACAAGTGTTTTAGATCCAACAAAAATGTGTCATTATATCTCAGAAATTATGGAGGGTCCGAACAATGGACCTTTATTCATGGTTTCTGTGGAGCACTGCCCAAGTGAGGTTTTCATCCATATTTCAGCTTCAAGATGCTGGGACATGATTAGAGAAAAAATAAATCAAGAGATTGCAAAGCAACATAGACAGGGAAAAGTTAACCTTCCTGCTTTGCTGCCTCCTGGCAGCGTAGATGGTTTTGAAATGTTTGGATTTTCATCACCGAAAATTGTACAGGCTATTGAGGCTTTGGACCGTAATCGAGTCTGTGCTGAATATTGGAATTCACGGCCTTACTCCTGTCCTCAACTGCAATCCACAGAAAACAGTAAAGACATCAACAGAAATCTGCCCTCTTCTACTGGGTCCGGTGCAGTGCTGAGAGGATTGTTTAGTAAGGCAAACCAAGAAGAACTGAACTCCTTATACAATATCCTCAGTGAAAATGGAAATGGTTTGCATCAAGTTCAAAGTCGAATCATGCAACTACTCAAAGAAGAAATTCACAGCCGGGTAGATGATTCATTGTGCCATAATACCCATGCAAGTTTTTGA 3747 0.4193 MGTELMRMCMKEDNDDFLSVPPGFESFSSFSFKRVEHTEKEDDKSMITCSASTSISEAQSVKSETGGQGSDDAKNHRSLRRKPSINYGQYDYCLEEESDSERHDRNFHSRPCLPKGVIRGCPECNNCQKIVAQWQPENARRPNLEDAPTFFPTEEEFEDTLSYISSIRERAEPYGICRIVPPPSWRPPCPLKEKNMWEHSTFATRVQRIDKLQNRDSMKKLSMSRNNMRRKKRRCIRMGIECGIGGAFDAKNLEAERFGFEPGPDFTLGMFERYAGDFKARYFGKNENFSDIADNVTTPKDTWEPSLEDLEGEYWRMVENPTEEIEVLYGADLETGVFGSGFPRHSGELSSATDDKYLKSGWNLNNFPRLRGSVLSYESSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKIWYGVPGKEACKLEEVMKKHLPDLFEEQPDLLHKLVTQLSPSILKSDGVPVYRCVQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPYGMIAVELYREQGRRTSLSHDKLLLGAARDAVRAHWELNLLKKNTLDNLRWKNFCGKDGILAKALKARVEMELVSREFFRSSSQALKMDSSFDANNERECSVCLFDLHLSAAGCHCCPERYACLSHAQQFCSCAWDSKFFLFRYNVSELNILVEALEGKLSAVYRWARLDLGLALTSYISRDHRQFGSVSKSSEETTVKESRSNNSASPYSSHCTVQKPDSPLPSSVSIKDHQQVHISKEIAAISKRKPDKSSESQAKVVSLTKTVLANKNSHAKKEESASSTSNLRPPVCQFSQTASCSSSPAVDQPEWKKGSGSGLENVIHLSDDEGEEAKLLVSDAKMEPSERVTGSNDKSKPLNNEQAILTAPVKCAAPMGEKNAVSLPDEKMNSISTDPVNKELHQGITPPDVSSNVGSVTAEPGRHMEVSTRESSDPRKKTSENGPQNAPRASYMRPYMEDRNEKSGVCANSNLVEIVKFSADASCSNSMDRNHRQGLRIARVIRRVNHTVEPIECGFVLSGNPWCNNQAIYPKGFKSRVRYTSVLDPTKMCHYISEIMEGPNNGPLFMVSVEHCPSEVFIHISASRCWDMIREKINQEIAKQHRQGKVNLPALLPPGSVDGFEMFGFSSPKIVQAIEALDRNRVCAEYWNSRPYSCPQLQSTENSKDINRNLPSSTGSGAVLRGLFSKANQEELNSLYNILSENGNGLHQVQSRIMQLLKEEIHSRVDDSLCHNTHASF* 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g02135 1248 SUPERFAMILY Clavaminate synthase-like 266 549 - -
Pte18g02135 1248 Pfam F/Y-rich N-terminus 1025 1066 IPR003888 GO:0005634
Pte18g02135 1248 FunFam Putative lysine-specific demethylase JMJ16 1017 1155 - -
Pte18g02135 1248 Gene3D Cupin 132 506 - -
Pte18g02135 1248 MobiDBLite consensus disorder prediction 913 963 - -
Pte18g02135 1248 MobiDBLite consensus disorder prediction 701 744 - -
Pte18g02135 1248 ProSiteProfiles JmjN domain profile. 147 188 IPR003349 -
Pte18g02135 1248 MobiDBLite consensus disorder prediction 47 68 - -
Pte18g02135 1248 Pfam C5HC2 zinc finger 612 662 IPR004198 -
Pte18g02135 1248 MobiDBLite consensus disorder prediction 39 80 - -
Pte18g02135 1248 PANTHER LYSINE-SPECIFIC DEMETHYLASE 140 1080 - -
Pte18g02135 1248 Pfam JmjC domain, hydroxylase 389 505 IPR003347 -
Pte18g02135 1248 Pfam jmjN domain 148 181 IPR003349 -
Pte18g02135 1248 MobiDBLite consensus disorder prediction 913 928 - -
Pte18g02135 1248 MobiDBLite consensus disorder prediction 934 948 - -
Pte18g02135 1248 SMART cupin_9 356 522 IPR003347 -
Pte18g02135 1248 MobiDBLite consensus disorder prediction 790 819 - -
Pte18g02135 1248 SMART fyrc_3 1075 1169 IPR003889 GO:0005634
Pte18g02135 1248 MobiDBLite consensus disorder prediction 781 832 - -
Pte18g02135 1248 Gene3D - 1019 1155 - -
Pte18g02135 1248 ProSiteProfiles JmjC domain profile. 356 522 IPR003347 -
Pte18g02135 1248 ProSiteProfiles FYR domain FYRN motif profile. 1011 1069 IPR003888 GO:0005634
Pte18g02135 1248 SMART fyrn_3 1025 1069 IPR003888 GO:0005634
Pte18g02135 1248 ProSiteProfiles FYR domain FYRC motif profile. 1071 1161 IPR003889 GO:0005634
Pte18g02135 1248 Pfam F/Y rich C-terminus 1073 1159 IPR003889 GO:0005634
Pte18g02135 1248 SMART JmjN_1 146 187 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g02135 Pte-Chr18 31344563 31351255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g02135 1 1235 JUMONJI Transcription Factor Family AT1G08620 52.983 0.0 1180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pte18g02135 JmjC 9.2e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g02135 K11446 - qsa:O6P43_007681 1467.21