Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g02134 ATGGCCACTCCATCTTCAACCGCTCCATCGTCTTCTTCTTCAACCTCATCTCAATTCACTTACGCAAATTCTTCTTACTTTCCCATGCCTTTTCACCTTCAACACTCTGCGGCTGCTGTGCCTACGCCTGCCTCTCAATTCATCGTTACTCCATACGTCGCCGCACCGGCTGTTCAGCTTCCGACTGCTTCCATTTACCCTGCTCCACCTACGGTTGGCGGCGTTTACTCTATTCCTCAATTCCAACAGGCGCAGCAGTTATTTCAAAGAGACGCATCAAATGTTAGACCCGAGGCAATTGAGAGTGTGAAGGCAGCCATTGCAAGCAGCGATATTGAGCATAAAGTTGATGCAAAGAAGAAAGCAGTTCCTAGAAAAGCAGCTGGCCAATCATGGGAGGATCCTACTCTCTCAGAATGGCCCGAGAATGATTATCGAGTATTTTGTGGTGATATTGGTAACGAGGTTAATGATGATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCGAAAGTTGTTAGAGATAAACGGACTGGAAAAACTAAAGGCTATGGGTTTGTTAGCTTTGGCAACCCTTCTGATCTAGCTGCAGCCCTTAAAGAGATGAATGGCAAATATGTTGGAAATCGACCTATTAAACTACGGAAGAGTAATTGGAAAGAAAGGATAGACCATACTGCCTTGGAGAAACAGAAGAACCAATGTCACAAGAAACAAAAGCAGACTAAAAAGGGTATACTTCACAAGTAA 762 0.4396 MATPSSTAPSSSSSTSSQFTYANSSYFPMPFHLQHSAAAVPTPASQFIVTPYVAAPAVQLPTASIYPAPPTVGGVYSIPQFQQAQQLFQRDASNVRPEAIESVKAAIASSDIEHKVDAKKKAVPRKAAGQSWEDPTLSEWPENDYRVFCGDIGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFGNPSDLAAALKEMNGKYVGNRPIKLRKSNWKERIDHTALEKQKNQCHKKQKQTKKGILHK* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g02134 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 223 IPR000504 GO:0003723
Pte18g02134 253 Gene3D - 81 220 IPR012677 -
Pte18g02134 253 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 74 236 - -
Pte18g02134 253 SMART rrm1_1 146 219 IPR000504 GO:0003723
Pte18g02134 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 147 217 IPR000504 GO:0003723
Pte18g02134 253 CDD RRM_RBM42 139 221 IPR034215 -
Pte18g02134 253 FunFam RNA-binding protein 42 80 230 - -
Pte18g02134 253 SUPERFAMILY RNA-binding domain, RBD 129 224 IPR035979 GO:0003676
Pte18g02134 253 MobiDBLite consensus disorder prediction 233 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g02134 Pte-Chr18 31337894 31341023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g02134 147 227 Eukaryotic Initiation Factors Gene Family AT1G71770 31.915 1.68e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g02134 K25079 - qsa:O6P43_011258 352.058