Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g02110 ATGAAAGTTGAGCCAGACGCAGACCGGTACAGCATGATTCATTTTGAGGAGACAGAGTTGCGGCTGGGTTTGCCTGGTGGAACAATTGGGAAAGATCATGGGAATGAATTAGTCAAGATGGAAACTACTCGTGCTTTAACAGCCATGGTTGCTAATGGGAAGAGAGGGTTTTCTGAGACTGTTGATTTGAAGCTTAATCTCTCCTTGGCCAAGGATCCGGTTTCAGGTGATGCTCTTGCAGACAAGACGAAAGAAAAAACTGCTGCGATCGCCGTCGCCCCACCCTCCAATGATCCTGCTAAACCACCTGCAAAAGCACAAGTTGTGGGTTGGCCACCCGTGCGATCTTTCAGAAAGAATATAGTAGCGGTGCAAAAGGCAAACGCAGTTAACGAAGCAGAGACAGGCAGCAGCAGTGCTGCCTTTGTCAAAGTAAGCATGGACGGTGCACCCTATTTACGTAAGGTGGACTTGAAGCTGTACAAGAGCTACCAAGAACTCTCTCATGCCTTAGCCAAAATGTTCAGCTCCTTCACCATTGGTAATTGCGGGTCACAAGGAATGAAGGATTTTATGAATGAAAGCAAGTTGATTGATTTTCTAAATGGATCTGACTATGTTCCAACGTATGAAGACAGAGATGGAGACTGGATGCTGGTTGGTGATGTGCCCTGGGAGATGTTCGTGCTTTCCTGCAGGCGCTTGAGAATCATGAAAGGATCCGAGGCAATTGGACTAGCTCCCAGGGCAGTGGAGAACTTCACACCCACTTCTCGAAACGCACTTCTCCCTCTGCTCCCCGACACTTCCTTCATCAGCCACCATTGCAGATCCTCTCCTCATCAGCTACCCACACCCCTCCCAAACACAAAAGACCTAGAAGCTACCGTTGCAGAGTCTGTCCAAAAGCTATTTCCAGAGAAGAGATTATCAACTGTCAACATTATTCTTTACGGGCAGATGGACTTCAACATTATTCCCACTGACAACCAAAATTGCTTCAAGCCGTTAACACACAGAAGCACGGATCTGGCAGCCATTGTCGCTTGGAGCATAAATAGTGTGAAAATTTAA 1074 0.4711 MKVEPDADRYSMIHFEETELRLGLPGGTIGKDHGNELVKMETTRALTAMVANGKRGFSETVDLKLNLSLAKDPVSGDALADKTKEKTAAIAVAPPSNDPAKPPAKAQVVGWPPVRSFRKNIVAVQKANAVNEAETGSSSAAFVKVSMDGAPYLRKVDLKLYKSYQELSHALAKMFSSFTIGNCGSQGMKDFMNESKLIDFLNGSDYVPTYEDRDGDWMLVGDVPWEMFVLSCRRLRIMKGSEAIGLAPRAVENFTPTSRNALLPLLPDTSFISHHCRSSPHQLPTPLPNTKDLEATVAESVQKLFPEKRLSTVNIILYGQMDFNIIPTDNQNCFKPLTHRSTDLAAIVAWSINSVKI* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g02110 357 Gene3D - 135 252 - -
Pte18g02110 357 ProSiteProfiles PB1 domain profile. 140 240 IPR000270 GO:0005515
Pte18g02110 357 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 14 245 IPR003311 GO:0005634|GO:0006355
Pte18g02110 357 SUPERFAMILY CAD & PB1 domains 135 239 - -
Pte18g02110 357 FunFam Auxin-responsive protein 135 250 - -
Pte18g02110 357 Pfam AUX/IAA family 17 249 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g02110 Pte-Chr18 31152574 31155302 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g02110 142 242 B3 DNA Binding Superfamily AT1G19220 34.653 5.31e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pte18g02110 AUX_IAA 6.9e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g02110 K14484 - cave:132171332 346.28