Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g02060 ATGGCTGGCAATTCTTCAGAAGGTTTAGGTGATGATTTCTTCGAGCAGATCTTAGCTGTGCCGTCTGCGTACTCAAATACTGAGGTAACAGGGTACGGGAGGGCAGGGGGTGGTGATTTAGGCGCCATGCCAATGGTGTTGCAGTTGGGTTCTAGTGTCAGTACCGATGATGTGTCTGGCAGTAATGGCAGTGGACTTAGAGGAATCGAGTCTATCGGCGTAGGCATGCCTCTTGGATTGAATTTGGGACACGGTTTTCTGAGACATGATCAAGACCGTGGTAGAAGCTTCAAGTTCATTGATGGACTTACTGAAGCCAATCATTGCCACCACCACCATCCTATCGCACATAACAATAGTACCGCCATCCCTTGTTCGGATTCTGCTGTAACAGGAATCACTGAGAGAGAGTCAGTGCATATGACAAACTTGTTTCCAGCGTTAACTCAGCTGCATGCACAGTCAACCAGACCAACAGGGCCTCCGCCACCCCATCCTCCTCAGCTCCAGAAGCCTTTTCAAGGTCAACCACCGTCTGCTGGGCCAGTTTCTACTGGACCACAACCACCTGGTGTGCGCCCCAGAGTCCGAGCAAGGCGAGGACAAGCCACTGATCCCCACAGTATCGCTGAGAGGTTGCGTAGAGAAAGGATTGCAGAAAGAATGAAGGCGTTGCAGGAATTAGTTCCAAGTGCAAATAAGATTGACAGGGCAGCAATGCTTGATGAAATTGTGGACTATGTGAAGTTTCTGAGACTTCAAGTAAAGGTTTTGAGCATGAGTAGGATGGGCGGAGCAGGAGCAGTTACTCAGCTTGTTGCTGATGTCCCTTTATCGACTATGGAGCTAGTTGTAGGTGATGGAACTGACGGCGGGACTAATCAACCATCATGGTCATGGGAGAAATGGTCAAATGATGGCACAGAACAAGAAGTAGCAAAATTAATGGAAGAAGACATCGGAGCTGCTATGCAATTCCTTCAGTCCAAAGCACTTTGTATAATGCCAATATCACTGGCCTCAGCAATTTTGCGCACCCCTCCATCCGACGTGCCGGCTGTCATCAAGACTGAATCAAATAACCACTAA 1089 0.4867 MAGNSSEGLGDDFFEQILAVPSAYSNTEVTGYGRAGGGDLGAMPMVLQLGSSVSTDDVSGSNGSGLRGIESIGVGMPLGLNLGHGFLRHDQDRGRSFKFIDGLTEANHCHHHHPIAHNNSTAIPCSDSAVTGITERESVHMTNLFPALTQLHAQSTRPTGPPPPHPPQLQKPFQGQPPSAGPVSTGPQPPGVRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSANKIDRAAMLDEIVDYVKFLRLQVKVLSMSRMGGAGAVTQLVADVPLSTMELVVGDGTDGGTNQPSWSWEKWSNDGTEQEVAKLMEEDIGAAMQFLQSKALCIMPISLASAILRTPPSDVPAVIKTESNNH* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g02060 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 251 IPR011598 GO:0046983
Pte18g02060 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 262 IPR036638 GO:0046983
Pte18g02060 362 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 86 342 - -
Pte18g02060 362 Gene3D - 197 259 IPR036638 GO:0046983
Pte18g02060 362 FunFam Transcription factor bHLH66 199 264 - -
Pte18g02060 362 SMART finulus 208 257 IPR011598 GO:0046983
Pte18g02060 362 Pfam Helix-loop-helix DNA-binding domain 207 251 IPR011598 GO:0046983
Pte18g02060 362 MobiDBLite consensus disorder prediction 153 210 - -
Pte18g02060 362 MobiDBLite consensus disorder prediction 157 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g02060 Pte-Chr18 30821364 30826247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g02060 173 360 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 70.213 7.86e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte18g02060 HLH 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g02060 - - qsa:O6P43_007633 413.69