Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g02054 ATGGATCAAGCTCGGTCTTCATCAGGGAATGCTGAAGACAATGTGGGAATTCCAGATGATTTGCGATGTAAGAGGTCAGATGGGAAACAATGGAGGTGCACTGCCATGTCAATGCCGGATAAGACGGTGTGTGAGAAACACTATATACAGGCAAAGAAAAGGGCGGCTAATTCTGCAATGAGAGCCAACTTGAAGAAAGCCAAAAAAAGGTCATTGGGTGAAAGCGATGTCTACCTTGAGAGCAGGAGTGATGATTTTGATGTGCCGCTTGCTCCAGATTATTCACGCCCTACTTCCGGGAAGAAGTTACTGGAAAGAGTATCTAAAAATCAGTTTCGGTATACTCCTGACAGATCTGCTGTAAAGAATACATCCACACATCCTGCTCCAAAGACCAGTGATGACTCGCCCGAAAATAATTCCCCATTTGAAGAGAACTGGAGGTCCTACGAGTCACCGCCAGCTTCTGGCATAGAGTACTCCAGAAAAATGCCCCAGAGGAGTTTTGATGCTAATACAACAGAATATTCTGATGCAAGCACAGATCCTTCCGAAGATACTGGAGGGCAACTTTGCCACCAATGCCAAAGGAATAACAGAGATGGAGTTATTTGGTGCCTTGGGTGTGATAAGAGAGGATATTGTGACAGCTGCATATCTGCATGGTATTCAGAGATCTCCATGGACGAAATCCAGAGGCACTGTCCTGCTTGTCGTGGTATTTGCAGTTGCAAAGTTTGTTTACGTGGTGATAATTCAATAAAGGTTAGGATACGAGAGATACCTGTTCTAGACAAGTTGCAGTACCTCCACTCTCTGTTGTCGTCTGTTCTGCCTGTTGTGAAGCGTATCCATCTGGTGCAGTGTTCAGAAGTGGAACTTGAGAAGAAGTTGCGGGGAACAGAGATAGATCTTCCAAGGACCAAACTGAATGCAGATGAGCAGATGTGCTGTAATTTGTGTAGGATACCCATCATTGATTACCATCGGCGCTGTCCCAACTGTTCATATGATCTGTGCTTAAATTGTTGTAGAGATCTTCGTGAAGGAAATTTAGATAAGAAAAATCCAGGAAAAGAACTTTACTCTGATCAAGAAATTGTTTCCAAGAAGCCCAAGTTCGCACATAAATTTCCTGATTGGAGATCGAACAGTGATGGCAGCATTCCATGCCCATCAAAATATGGTGGCTGTGGATTTTCAATGTTGCATTTAAGTCGCATTTTCAAGATGAATTGGGTTGCAAAATTGGCAAAAAATGTGGAGGAAATGGTGAGTGGTTGTACCATTAATAGTACTAGCAATCAATCTGGAGGCATATGTGATGGTATTGGGCTTTGCCAGTTTTCTAGTAGAAAGGACAGTGATGATAACTCCCTGTACTGCCCAGCATCTGAAGACTTGAAACGGGATGGGATTGCAAGATTTAGAAAACACTGGCAGAGAGGGGAACCTGTTATTGTTACGCAGGTATTTGATTGCTCATCCACGTCTAGCTGGGATCCAATGGTAATATGGAGAGCTATCAGTGAGACAGAAGATGATAAAGTAAAAGCTGAGAATAGACTGGTTAAGGTTATAGATTGCTTGGATTGGTCTGAGGTTAAGATTGAAATTAGTCAGTTTATTGAAGGTTACTCTGAGGGGAGAATCCATGATGATGGCTGGCCAGAAATCTTAAAGTTGAAAGATTGGCCGTCGCCCAGTGCATCTGAAGAATTTTTGTTGTACCAAAGGCCTGAGTTCATCAGTAAACTGCCTTTACTGGAGTATATCCACTCTAAATGGGGCCTTCTCAATGTTGCAGCTAAACTGCCTCATTACTCCTTGCAGAATGATGTTGGGCCTAAGATATATATATCTTATGGGATACAAGAACAGCTTGGTAGGGGTGATTCAGTGACCAATCTCCATTTCAACATGCGTGACATGATGTATCTCTTGGTCCATGCATGTGAACTGAAATTAAAAGGATGGCAGAGAAGCAAAATTGAGCAACTGCGGAAAAATTACAATGAAGCTGAGGTGAAAGAACCATCTGATCCGCAAATATGTTCAGAGAGGAGTTTACCTGATTTATCTCTTGAAGTGGATAGTAATGGAGTAAATCAGAGCTCAGACGAGAATGAATCAACTATACATGGAGTTGAGACGCCATCCAGAGATCAGGCTTCAGTTGATGGTGGATACATCCGGAGTCAAGATGGCGAATACATCCAGACTGAAGATGGTGATTGCTCGCAGAATACCCAACCTGGAGTTATTTGGGACGTCTTTCGCCGACAGGATGTTTCAAAGCTGATGGAATATTTGAGGATGCATTGGAAGGAATTTGGAAAGCCTGACAGTTTTGTGGATGAATATGTCCTGAGGACACTTTATGAGGGAGTAGTCTATTTGGATAGTCATCACAAAACAAAACTGAAGAATGAATTTGGAGTGGAGCCATGGTCATTTGAGCAACACTTGGGTCAGGCTATATTTGTACCTGCTGGTTGTCCTTTCCAAGCGCGAAACGTTCAGTCGACAGTGCAATTGGGCCTTGATTTCTTGTTTCCTGAAAGTCTGGGTGAGGCTTCCAGATTAGCTGAGGGAGTCTGTTCTTTGCCAGATGATCTTGAAGCAAAGCTTCAAGTCTTGGAGGTTGGGAAGATTTCACTCTATGCAGCTAGTTCGTCGATAAAAGAAGCTCAGAAACTCGTTCTTGACCCAAAGTTTAGTTCAGATATCGGATTTGAAGATCCTAATCTGACAGCAATGGTTGCAGATAACTTGGAGAGAATAGTAAAGCGAAGGCAGAGACTTGTGCATGCAGTTTGA 2820 0.4298 MDQARSSSGNAEDNVGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKKRSLGESDVYLESRSDDFDVPLAPDYSRPTSGKKLLERVSKNQFRYTPDRSAVKNTSTHPAPKTSDDSPENNSPFEENWRSYESPPASGIEYSRKMPQRSFDANTTEYSDASTDPSEDTGGQLCHQCQRNNRDGVIWCLGCDKRGYCDSCISAWYSEISMDEIQRHCPACRGICSCKVCLRGDNSIKVRIREIPVLDKLQYLHSLLSSVLPVVKRIHLVQCSEVELEKKLRGTEIDLPRTKLNADEQMCCNLCRIPIIDYHRRCPNCSYDLCLNCCRDLREGNLDKKNPGKELYSDQEIVSKKPKFAHKFPDWRSNSDGSIPCPSKYGGCGFSMLHLSRIFKMNWVAKLAKNVEEMVSGCTINSTSNQSGGICDGIGLCQFSSRKDSDDNSLYCPASEDLKRDGIARFRKHWQRGEPVIVTQVFDCSSTSSWDPMVIWRAISETEDDKVKAENRLVKVIDCLDWSEVKIEISQFIEGYSEGRIHDDGWPEILKLKDWPSPSASEEFLLYQRPEFISKLPLLEYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGIQEQLGRGDSVTNLHFNMRDMMYLLVHACELKLKGWQRSKIEQLRKNYNEAEVKEPSDPQICSERSLPDLSLEVDSNGVNQSSDENESTIHGVETPSRDQASVDGGYIRSQDGEYIQTEDGDCSQNTQPGVIWDVFRRQDVSKLMEYLRMHWKEFGKPDSFVDEYVLRTLYEGVVYLDSHHKTKLKNEFGVEPWSFEQHLGQAIFVPAGCPFQARNVQSTVQLGLDFLFPESLGEASRLAEGVCSLPDDLEAKLQVLEVGKISLYAASSSIKEAQKLVLDPKFSSDIGFEDPNLTAMVADNLERIVKRRQRLVHAV* 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g02054 939 SMART cupin_9 575 867 IPR003347 -
Pte18g02054 939 MobiDBLite consensus disorder prediction 699 719 - -
Pte18g02054 939 Pfam JmjC domain, hydroxylase 804 846 IPR003347 -
Pte18g02054 939 Gene3D Cupin 457 875 - -
Pte18g02054 939 ProSiteProfiles Zinc finger RING-type profile. 192 239 IPR001841 -
Pte18g02054 939 SUPERFAMILY Clavaminate synthase-like 475 865 - -
Pte18g02054 939 ProSiteProfiles JmjC domain profile. 568 867 IPR003347 -
Pte18g02054 939 MobiDBLite consensus disorder prediction 67 89 - -
Pte18g02054 939 MobiDBLite consensus disorder prediction 1 21 - -
Pte18g02054 939 Pfam WRC 18 58 IPR014977 -
Pte18g02054 939 MobiDBLite consensus disorder prediction 113 147 - -
Pte18g02054 939 MobiDBLite consensus disorder prediction 55 160 - -
Pte18g02054 939 ProSiteProfiles WRC domain profile. 17 61 IPR014977 -
Pte18g02054 939 MobiDBLite consensus disorder prediction 699 727 - -
Pte18g02054 939 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 19 901 IPR045109 GO:0032454|GO:0033169
Pte18g02054 939 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 187 252 IPR018866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g02054 Pte-Chr18 30789347 30797168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g02054 18 58 GRF Transcription Factor Family AT3G13960 46.341 2.85e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pte18g02054 JmjC 2e-05 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g02054 K15601 - qsa:O6P43_007503 1343.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g02054 18 30789347 30797168 Pte18g02054 18 30789347 30797168 RCT