Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g02053 ATGGACAGTGACCAGGAGAGATTGTTGCCAATAGCCAATGTGGGTCGAATCATGAAGCAAATTCTTCCTCCTAATGCAAAAATTTCGAAAGAGGCCAAACAAACTATGCAAGAATGTGCAACAGAGTTCATAAGTTTTGTAACAGGTGAGGCAGCTGACAAGTGTCACAAAGAGAATCGCAAGACGGTGAATGGGGACGACATTTATTGGGCTCTAAGCACATTAGGGTTTGATAACTACGCTGATGCTATACTAAGGTACTTGCATAAATGCAGGGAGGCAGAGAGGGAGAGAGCTAATCAAAGTAAAGATAATAGTAGTGGTGGTGGCTTCCCAGAACAGCATCAAGAATCATCGGACCAGTACCAAAGGAGCCCACTTGACAAGCAGTGTACTACAGTTCCTACTTCATCAGAACATATGATTTCCAGAAAGCTTGGTGACGCTTCAGTGAAGCAATCTTAA 465 0.4323 MDSDQERLLPIANVGRIMKQILPPNAKISKEAKQTMQECATEFISFVTGEAADKCHKENRKTVNGDDIYWALSTLGFDNYADAILRYLHKCREAERERANQSKDNSSGGGFPEQHQESSDQYQRSPLDKQCTTVPTSSEHMISRKLGDASVKQS* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g02053 154 SUPERFAMILY Histone-fold 5 117 IPR009072 GO:0046982
Pte18g02053 154 MobiDBLite consensus disorder prediction 103 140 - -
Pte18g02053 154 MobiDBLite consensus disorder prediction 94 154 - -
Pte18g02053 154 PRINTS CCAAT-binding transcription factor subunit A signature 36 54 - -
Pte18g02053 154 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Pte18g02053 154 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Pte18g02053 154 Gene3D Histone, subunit A 1 132 IPR009072 GO:0046982
Pte18g02053 154 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 72 IPR003958 -
Pte18g02053 154 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 3 121 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g02053 Pte-Chr18 30784785 30785249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g02053 3 127 CCAAT-HAP3 Transcription Factor Family AT1G09030 68.800 6.75e-61 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pte18g02053 CBFD_NFYB_HMF 1.7e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g02053 K08065 - pvy:116118424 188.348
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g02053 18 30784785 30785249 Pte18g02053 18 30784785 30785249 RCT