Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g02041 ATGAGTCGTCGCTCCAAGAGTACTATATACGTCGGTAACCTTCCTGGTGATATTCGTTTGCGAGAAGTTGAAGATCTGTTTTACAAGTTTGGCCCCATTGTTGATATTGATCTGAAGATCCCTCCGAGACCACCTGGTTATGCATTTGTGGAGTTTGAGGATATTCGTGATGCTGAAGAGGCAATCTACCGCCGAGATGGTTATGATTTTGATGGATACCGGCTGCGGGTAGAATTTGCTCATGGAGGACGCGGATACTCATCCTCATCTGATTATTATAGTGGGAGTAGTAGTAGCCGTGGAATTCCTAGATATTCTGATTATCGTGTATTGGTCACTGGTTTGCCACACTCTGCCTCATGGCAAGACCTGAAGGATCACATGCGCAAAGGGGGTGAGGTCTGTTTTTCTCAAGTGTTCCGTGACCGTGGTGGTATGACAGGAATTGTAGATTATACCAACCGTGAAGATATGAAGTATGCGATAAGGAAACTTGATGACTCAGAATTCAGAAATGCATTCTCTCGAGCATATATACGGGTGAGAGAGTACGGCTCCAGGAGGAGCTACTCAAGAAGTACCAGTTGTGACTCAAGGAGAAGCTACTCTAGAAGTATTAGCCGCAGCCCTTACAGGTCTCTCAGTCCAAGACGAAGTTACAGTGACAGAAGTAGAAGTTACTCTCCAAATGATAGACGCATACGACCTTCACCATCTCGCTCAAGGTTAGTACTTTCACCAAAGCTCATGTTCAGTTTGAATGTTGGATGCATGAATAAACTGAAATTATCCTCATGTTGTGTCGTGAGATTTTTGCAGATGGCCTTTGTTATTATATCTCGGTGTAAAATTCTATTGGATCTATGTCATATGAGTGAAACTGAAATTATTAGCTTCACCAGTTAA 906 0.4316 MSRRSKSTIYVGNLPGDIRLREVEDLFYKFGPIVDIDLKIPPRPPGYAFVEFEDIRDAEEAIYRRDGYDFDGYRLRVEFAHGGRGYSSSSDYYSGSSSSRGIPRYSDYRVLVTGLPHSASWQDLKDHMRKGGEVCFSQVFRDRGGMTGIVDYTNREDMKYAIRKLDDSEFRNAFSRAYIRVREYGSRRSYSRSTSCDSRRSYSRSISRSPYRSLSPRRSYSDRSRSYSPNDRRIRPSPSRSRLVLSPKLMFSLNVGCMNKLKLSSCCVVRFLQMAFVIISRCKILLDLCHMSETEIISFTS* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g02041 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Pte18g02041 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Pte18g02041 301 CDD RRM1_SF2_plant_like 8 78 - -
Pte18g02041 301 MobiDBLite consensus disorder prediction 190 238 - -
Pte18g02041 301 SUPERFAMILY RNA-binding domain, RBD 7 174 IPR035979 GO:0003676
Pte18g02041 301 CDD RRM2_SF2_plant_like 108 183 - -
Pte18g02041 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 172 IPR000504 GO:0003723
Pte18g02041 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Pte18g02041 301 SMART rrm1_1 109 178 IPR000504 GO:0003723
Pte18g02041 301 SMART rrm1_1 8 78 IPR000504 GO:0003723
Pte18g02041 301 MobiDBLite consensus disorder prediction 224 238 - -
Pte18g02041 301 Gene3D - 108 185 IPR012677 -
Pte18g02041 301 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 5 236 - -
Pte18g02041 301 FunFam serine/arginine-rich splicing factor SR34A-like 108 185 - -
Pte18g02041 301 MobiDBLite consensus disorder prediction 190 223 - -
Pte18g02041 301 Gene3D - 2 107 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g02041 Pte-Chr18 30716272 30720792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g02041 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 33.333 3.99e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g02041 K12890 - csv:101223011 290.426