Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g02030 ATGGTAAGGGGAGGAAGAGTTGGTGGTAGACGCAAGCCGAGGAAAAGGGCTCGGTCAAAGGGTAGAGACTCTGATGAGTCGGTTGAGGATTTTGTAATTTCAGAGGAGGAAAAAGTACTCTCCGAAGGTTCAGAGGATTATGGTGCTTCCTCAGACACGGAAGCTTCCGATGAAAGTTTTGATAGTATTATCGAGGAAGAAGAGGAGGAAATCAAACAATTAAGGAAACCCAAAAGATCAAGAAGGGAGAATAGGGTTTCTTGTCACACAAAAGTTGGATGCAAAACATCAAGGAAGCGGGGAAGGAGTGCACTTCAACAACAGGTAGAAGGGAAAGATGATGGTGATGATAGTGATGAAGATTATGACTATGAAGATGAGGAGGATTATGAAGATGAGGAGGAGGAAGATGATGAATTTACACTGGATGAAGATGATTGTTCAGATGAGGATGATGAAATATGGGTGGCAAAGAGGAAAAATAACATGAAAACTGCCAAACAGAATTTACCTAAAAAGTCTCCTGCTGGATGTAAAAAAAGGAAGAGATCCAGATCTTCAAAGAAGCAATTGAGAAACAAAAGAAGAACAAATTGTGGATTAAGAAAAAATGTGAGACATGACAAGCCACTTGACCATGTATATACTGTCCAAAATGCTAGGGTCAAGAGTAAGAAGAAGACCAGTCGAAGAAAGAAGTCTTCCCTGGCATCTTCAGGTTCAGATTTCACATTTTCTGAATCATCCAATTACGAGTATACCATCTCCGAGGAAGAGAGGGAGCAGGTGAGAGAAGCAAAAGAGTTGTGTGAAAATTTGAGAACCAATTTGAGGAGTTCTTCAATGCCAACGAATGTTGATGACAACAGGCACCGACTGCATCAAAGAAAGCTTCCTGCAAGGAAGAGTAAGGAGAAAATGACTGAGCCTTTGTGTAGGAAAGGTAAGGAGAAGATAGATGAATTGAAAACTGAAGTGGGAAAGCAGGTGTGTGGGATTTGTTTGTCTGAGGAAGACACAAAAAGAGTTAGAGGGAATCTTAATTGTTGTACTCATTATTTTTGCTTTGCATGCATCATGGAGTGGGCAAAAGTGGAATCTCGTTGCCCATTGTGCAAGCAGAGATTTCAAACGATCACTAAACCTGCCAGGTCAACCACTGGAATTGATCTGAGAGAAGTGGTGATACAAGTTCCTGAGCGTGATCAGGTTTATCAGCCTTCTGAAGAAGAGCTCAGGAGTTATATCGATCCCTACGAGTGTGTGATTTGTTCTGAATGCCATCAAGGTGGCGATGATGCCCTGATGTTACTGTGCGATATTTGTGATACACCTGCGCATACGTTTTGTGTTGGTCTAGGCCGGGAAGTACCCCAAGGTGATTGGTTCTGTTTTGGCTGTAGACCTGCTCAGATTGCACTCTTGGGTTCCGCTTCAAGTTCCCAAGCTGAAGAACGCGTGCATGATCAGATGATGACCAGTCAGACAGCTTATACTCAACAATTGCCTTTGGTAACTGCTAGGGATGGCATAGACCTCAACTTCTTTTCTCCACCACCTGCATCTCTTAGCCAAGGATTCAGTAATCTTTCGTCTCCAAGATTAGCAACTAGAGGCATAGAAGGCCCTTCTCCAATGTCTGGAGGAGGGGCCCCAACCTTATCAGGAAGGCGCTGGATACATAGGCAAATTCAACAGCTTCTGTCAATGGACAGAATGAATTCTAACGCTGCCAGAATAGATGGGTTAGTAAATGCAAACACAGCTAGTGAAAATTTGTATATGTCTCAAATCAATCGAAATCCAGCTATGGTTCACAATACAAGCCAGGAAATGGGTACACCATATCATCCACCTGTTGATGAGAGATTACAGTATAATAACAACTCTCCACTAGAGCGGACTAGGGATTTATACTTGACAAGAACTGGCAATGTACAAGGATTGCAAGATTCCTTAGCGATGACTAATGCATCTCTGCATGGCCCGTTTCTGGGAATGCAAACCGTGACTAATGAACAAGTTCATCGGTTCAATGGCAGATCGAACATTGCCATTGACGGTACGGCTGCCCCTGATTCTGATGCAGAAGAGAGCAACTTTCATTTGGTGCAGTCATTGGTTAACGGCCATCTTGAGAAGTTGTCCCATGATACTGGTCTCTGTCAGGGTACTTTAAAGGAGATCACAAGGAGTTGCACGCACACACTACTGGCTGCTTGTGGTCTGGAGCACAAGAGAGGCGAGGTCTGTGCAGTGCCCGCACCATCCGTCTGCTCTCATATTGAGTTAACGGTTGGCGGGGCAACGAGTCTCATGAAAGGCTGCTGCTCGTCTTGCTTTGATAATTATGTATTGGACGTGGTGAAGAGGGTCATGGACACGAGAACATCACAGTGGTTACGTTTAGGTCTCTAG 2418 0.4392 MVRGGRVGGRRKPRKRARSKGRDSDESVEDFVISEEEKVLSEGSEDYGASSDTEASDESFDSIIEEEEEEIKQLRKPKRSRRENRVSCHTKVGCKTSRKRGRSALQQQVEGKDDGDDSDEDYDYEDEEDYEDEEEEDDEFTLDEDDCSDEDDEIWVAKRKNNMKTAKQNLPKKSPAGCKKRKRSRSSKKQLRNKRRTNCGLRKNVRHDKPLDHVYTVQNARVKSKKKTSRRKKSSLASSGSDFTFSESSNYEYTISEEEREQVREAKELCENLRTNLRSSSMPTNVDDNRHRLHQRKLPARKSKEKMTEPLCRKGKEKIDELKTEVGKQVCGICLSEEDTKRVRGNLNCCTHYFCFACIMEWAKVESRCPLCKQRFQTITKPARSTTGIDLREVVIQVPERDQVYQPSEEELRSYIDPYECVICSECHQGGDDALMLLCDICDTPAHTFCVGLGREVPQGDWFCFGCRPAQIALLGSASSSQAEERVHDQMMTSQTAYTQQLPLVTARDGIDLNFFSPPPASLSQGFSNLSSPRLATRGIEGPSPMSGGGAPTLSGRRWIHRQIQQLLSMDRMNSNAARIDGLVNANTASENLYMSQINRNPAMVHNTSQEMGTPYHPPVDERLQYNNNSPLERTRDLYLTRTGNVQGLQDSLAMTNASLHGPFLGMQTVTNEQVHRFNGRSNIAIDGTAAPDSDAEESNFHLVQSLVNGHLEKLSHDTGLCQGTLKEITRSCTHTLLAACGLEHKRGEVCAVPAPSVCSHIELTVGGATSLMKGCCSSCFDNYVLDVVKRVMDTRTSQWLRLGL* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g02030 805 SMART PHD_3 423 468 IPR001965 -
Pte18g02030 805 MobiDBLite consensus disorder prediction 113 151 - -
Pte18g02030 805 SMART ring_2 331 372 IPR001841 -
Pte18g02030 805 ProSitePatterns Zinc finger RING-type signature. 350 359 IPR017907 -
Pte18g02030 805 MobiDBLite consensus disorder prediction 1 241 - -
Pte18g02030 805 Pfam PHD-finger 421 469 IPR019787 -
Pte18g02030 805 SUPERFAMILY FYVE/PHD zinc finger 393 469 IPR011011 -
Pte18g02030 805 MobiDBLite consensus disorder prediction 19 43 - -
Pte18g02030 805 SUPERFAMILY RING/U-box 325 379 - -
Pte18g02030 805 PANTHER F18C1.6 PROTEIN 1 797 - -
Pte18g02030 805 Pfam Ring finger domain 330 373 IPR001841 -
Pte18g02030 805 Coils Coil 256 276 - -
Pte18g02030 805 ProSiteProfiles Zinc finger RING-type profile. 331 373 IPR001841 -
Pte18g02030 805 CDD RING-HC_Topors 329 376 - -
Pte18g02030 805 MobiDBLite consensus disorder prediction 174 202 - -
Pte18g02030 805 MobiDBLite consensus disorder prediction 1 18 - -
Pte18g02030 805 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 387 472 IPR013083 -
Pte18g02030 805 ProSiteProfiles Zinc finger PHD-type profile. 418 470 IPR019787 -
Pte18g02030 805 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 386 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g02030 Pte-Chr18 30637121 30641030 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g02030 331 378 C3H Transcription Factor Family AT2G39100 37.500 1.52e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte18g02030 PHD 9.6e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g02030 - - qsa:O6P43_007449 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g02030 18 30637121 30641030 Pte18g02030 18 30637121 30641030 RCT