Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g02027 ATGGCGACAAGGAACCGGACTTTGATATATAAGAAGTACAGAGATGCGTTAAAGAGTGTCCGCGTCACGTCCACTTCCTTTCCTTCGGCGAGTTCTTCCGGCATTGGCGGTCCGGTTATCGAATTGACTACCACGTCGCTGTTGAATCCAAATCGATCTTATACTCCGCTCAGCACTGAAGATCCTGGTGATGCAAGAAAAGATGCACTTACAGTGGGATTGCCTCCAGCTTGGGTGGATGTCTCTGAAGAAATTTCAGCAAATGTCCATCGTGCGCGTACAAAAATGGCAGCGCTAGCCAAAGCTCATTCAAAGGCTTTGATGCCTTCGTTTGGAGATGGTAAAGAAGATCAGTGCATGATAGAGGCTCTTACACAAGAGATTACTGATTTGATAAGACGATCAGAGAAGAGACTGCAGAGACTTTCTGCTGCGGGGCCTTCTGAAGACTCAAATGTCAGAAAAAATGTTCAGCGTTCTCTTGCAACTGACCTTCAGAATCTTTCGGTGGAGCTTCGAAAGAAACAGTCAAGTTATTTGAAGCGCCTCAGGCAGCAAAAAGAGGATCAAGATGAGGTTGACTTAGAGATGAATAGGAATGGGGGAAGATATCAAGAAGATGACGACTTGGACAGCATGGTTTTCTCTGAGCGTCAGATGGCCAAATTCAAGAAAAGTGAAGCATTCACAGTAGAAAGAGAAAGAGAGATCCAACAGGTTGTGGAATCTGTAAATGAGCTTGCTCAAATAATGAAGGATTTATCTGTATTAGTAATAGACCAGGGAACTATTGTGGATAGAATAGACTACAACATTCAGAATGTTGCAACCACAGTTGAAGAAGGGCTTAAACAACTACAGAAGGCAGAAAGAACTCAAAAACAAGGGGGCATGGTGATGTGTGCTACGGTGCTCGTAATCATGTGCTTCATTATGTTGGTTCTCTTGATCCTGAAAACAATATTATTTTGA 972 0.4331 MATRNRTLIYKKYRDALKSVRVTSTSFPSASSSGIGGPVIELTTTSLLNPNRSYTPLSTEDPGDARKDALTVGLPPAWVDVSEEISANVHRARTKMAALAKAHSKALMPSFGDGKEDQCMIEALTQEITDLIRRSEKRLQRLSAAGPSEDSNVRKNVQRSLATDLQNLSVELRKKQSSYLKRLRQQKEDQDEVDLEMNRNGGRYQEDDDLDSMVFSERQMAKFKKSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEEGLKQLQKAERTQKQGGMVMCATVLVIMCFIMLVLLILKTILF* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g02027 323 ProSitePatterns Syntaxin / epimorphin family signature. 233 272 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pte18g02027 323 SUPERFAMILY t-snare proteins 74 282 IPR010989 GO:0016020|GO:0016192
Pte18g02027 323 Pfam SNARE domain 263 315 IPR000727 -
Pte18g02027 323 CDD SNARE_syntaxin16 232 288 - -
Pte18g02027 323 SMART tSNARE_6 222 289 IPR000727 -
Pte18g02027 323 FunFam Syntaxin-43 75 281 - -
Pte18g02027 323 Gene3D - 75 281 - -
Pte18g02027 323 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 227 289 IPR000727 -
Pte18g02027 323 PANTHER SYNTAXIN 81 308 IPR045242 -
Pte18g02027 323 SMART SynN_4 69 184 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g02027 Pte-Chr18 30622432 30626649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g02027 1 324 SNARE and Associated Proteins AT5G26980 74.312 2.45e-174 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g02027 K08489 - pop:18098621 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g02027 18 30622432 30626649 Pte18g02027 18 30622432 30626649 RCT