Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g02023 GGTGACGAAGGTAAGGAGTTCATCACTGTTGAGCATTGTGGTGATGATTTTCTTGCCAGCCTTGCTGATTATGTACAAGACACTGAAGAATGGGAATGGGAGGATTTGCAAGCTGTGGAATCTGAAGCCTGTGGAAACCTAAATAACTTATTTAATGAAAATGATGTTCTTCAATGCAACAACAAATGCACACAGACATCCATAAGTGAACAGAGTGTTCTCAGTTATGAAGAATTGCAGGCTCTGAATGATGTTGAATTAGCAAATATCGTAATCTTTGGTAACAAGACATTCCGACCTTTGCAGCGCGAAGCATGTGAAGGAGCTCTATCAAAGAAAGACTGTTTTATTCTTATGCCCACAGGAGGTGGTAAATCCCTATGTTACCAGCTTCCTGCAACACTGCAAGAAGGTGTTACAATTGTCATCTCTCCCTTACTTTCTCTTATTCAAGATCAGATAGTCACACTCAATGTGAAATTTGGAATACCAGCCACATTTTTGAATTCTCAACAAACTACTTCTCAAGCTGCAGCTGTGCTCCAAGAACTAAGGCAAGATAAACTGTATTGCAAGCTTCTGTATGTGACTCCAGAGAGGATTGTTGGAAACCGATCATTTCATGAAGTTCTAAAATGCTTACACTGGAAGGGACAACTAGCAGGTTTCGTTGTCGATGAAGCACACTGTGTCAGCCAATGGGGGCATGACTTTCGTCCAGACTACAGAGGATTAGGATGCCTTAAGCAGAACTTTCCGGATATTCCGTTGATGGCATTGACTGCCACAGCAACCCCTTCTGTACGGGAGGATATTTTAAAAGCTTTACGAATTTCCAATGCACTTGTCCTTGAAAGGAGTTTTGACAGGCCCAACTTGAAATATGAAGTGATTAATAAGACCAAAGAGCCACTGAAGCAACTTGCAGCCCTAGTCTCAGATCGTTTCAAGAATCAGTGTGGAATTGTTTACTGTCTCTCAAAAAGTGAATGTGTTGAGGTTTCAAAGTTTTTGAATGAAAAATGCAAGGTAAAGACGGCATATTACCATGCTGGATTGGCTGCTCGTCAGAGAGTTGCTGTTCAAATGAAATGGCACACAGGGGAGATCAATATTGTTTGCGCTACCATTGCTTTTGGAATGGGAATAGACAAACCAGATGTTCGTTTTGTGATCCATAATACTATGTCGAAATCGATTGAAAGCTACTATCAAGAATCAGGAAGGGCTGGAAGAGATAATCTTCCTGCCGTTTGTATCGCTTTATACCAGAAGAAGGATTTCAGTAGAGTTGTATGCATGTTGCGGACTAGCCAAAAGTACAAAAGAGGTAGTTTTAAGACAGCGATGGCACAAGCCCAGGCTATGAGACAGTACTGCGACCTTAAGGGTGAGTGCCGAAGACAAGCCTTACTCAAGCACTTTGGGGAATCTTTAGACCAGAAAGCCTGCAAATTTGGATCCAACCCTTGTGATAATTGTCTCAAGCGTACTTCG 1497 0.4182 GDEGKEFITVEHCGDDFLASLADYVQDTEEWEWEDLQAVESEACGNLNNLFNENDVLQCNNKCTQTSISEQSVLSYEELQALNDVELANIVIFGNKTFRPLQREACEGALSKKDCFILMPTGGGKSLCYQLPATLQEGVTIVISPLLSLIQDQIVTLNVKFGIPATFLNSQQTTSQAAAVLQELRQDKLYCKLLYVTPERIVGNRSFHEVLKCLHWKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGCLKQNFPDIPLMALTATATPSVREDILKALRISNALVLERSFDRPNLKYEVINKTKEPLKQLAALVSDRFKNQCGIVYCLSKSECVEVSKFLNEKCKVKTAYYHAGLAARQRVAVQMKWHTGEINIVCATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCMLRTSQKYKRGSFKTAMAQAQAMRQYCDLKGECRRQALLKHFGESLDQKACKFGSNPCDNCLKRTS 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g02023 499 PANTHER DNA HELICASE RECQ FAMILY MEMBER 76 496 - -
Pte18g02023 499 NCBIfam RecQ family ATP-dependent DNA helicase 92 497 IPR004589 GO:0004386|GO:0006310
Pte18g02023 499 Pfam Helicase conserved C-terminal domain 306 413 IPR001650 -
Pte18g02023 499 CDD DEXHc_RecQ 92 289 - -
Pte18g02023 499 FunFam ATP-dependent DNA helicase 79 289 - -
Pte18g02023 499 Pfam RecQ zinc-binding 426 495 IPR032284 -
Pte18g02023 499 Gene3D - 56 289 IPR027417 -
Pte18g02023 499 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 304 457 IPR001650 -
Pte18g02023 499 SMART ultradead3 94 298 IPR014001 -
Pte18g02023 499 Pfam DEAD/DEAH box helicase 100 268 IPR011545 GO:0003676|GO:0005524
Pte18g02023 499 Gene3D - 290 498 IPR027417 -
Pte18g02023 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 434 IPR027417 -
Pte18g02023 499 CDD SF2_C_RecQ 290 423 - -
Pte18g02023 499 FunFam ATP-dependent DNA helicase 290 497 - -
Pte18g02023 499 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 106 282 IPR014001 -
Pte18g02023 499 SMART helicmild6 332 414 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g02023 Pte-Chr18 30597525 30601926 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g02023 322 412 Eukaryotic Initiation Factors Gene Family AT5G11170 31.868 1.92e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g02023 K10899 - cave:132172585 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g02023 18 30597525 30601926 Pte18g02023 18 30597525 30601926 RCT