Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g02013 ATGAATCTTTCAAATTGGATACGGAATCGTCGAAACGAACAGAGAAATCGGCGACAGGAAAAATTGTCAGGAAAAAAAAAGGATTTGCAGGAGTTTCTGAATGATTTGCAGGATTGGGAGCTTAACAAGCCGTCCAAAACTAGCAACTCACGAATAAAAATGCATCAGCGCCAAAAATCGGGTTCGACTTCTCGAAACTCTGAAATAGCTGCCAATACTGGAGCATCAAGAAGTCCTAACAATTATGGTGCCAACCTTGTTGGTGTTAGTCACGCGGCTGAAGATGTTCCAGATGCTGCCTCAGAGAAAGAACTGGGCAATGAATATTTCAAGCAGAAAAAGTTTAAGGAAGCTATTGACTGCTATTCTAGAAGCATAGCATTTACACCATCAGCTGTAGCTTATGCAAACCGGGCAATGGCCTATCTTAAACTAAAAAGATTCCGAGAAGCTGAGGAGGACTGTACAGAGGCCTTAAATCTAGATGATCGTTATATAAAAGCATATTCACGCCGTGCAACAGCTAGAAAGGAACTTGGGAAACTTAAAGGATCCATGGAGGATGCTGAGTTTGCCTTAAGGTTGGAGCCAAATAATCAAGAAGTCAAGAAGCAATATATGGAGGCTAAATCTTTGTATGAAGAGGAGATCCTTGCGAAGGCAACAGGAGCTCTGAGGCGTTCTGTAGAAGGAGGGCAAAAACCAAGGAAGTCAGAGACAAGTCACGGTTCTGTTCCCCTTTCAAGTAGTACTACTCAAAAGTCAAGAGTTACTGAAGTTCAGGATCAAGCCAAGGAAAATGGTCATCAATCTCTTGTGAGCGAAAAGGATAGAAATATAACTGATGTTGCAAAAAGCAGAGTTGAAGGAAGTGTAGGTGCTCTCAGAGATGGTGTTGAGAGTACCGACAAAGTCCGCAAGCAAGTACTTGGTGCGTCAGTTCAAGAGCTTGCTTCGCGAGCAGCTTCGCGAGCTCTGGTAGAAGCAGCAAAGAACATCACACCTCCATCTTCAGCTTATCAATTTGAGGCATCATGGAGAGGGTTTTCTGGTGATCAATCCCTGCAAGCTCGTCTTCTCAAGACTGTAACACCTTCGAATTTGCCGCAAATATTCAAAGATGCTCTATCTGCTACCCTGTTAGTTGATATTATTAAGTGCATCAGCTCTTTTTTCAAGGAGGAGATGGATGTTGCACTAAGTTATTTAGACCATTTAACCAAGGTGTCGAGATTTGACTTGCTCATTATGTGTCTTTCTTCAAGTGAGCACGATGGTTTGGTCATGATTTATGATCGACTCTGTAACCTTTACATAGTGGACCAGCGTTTCTACTTCACTGGCACATGGTCTGTTAATGGAAGAACTCCTAAATCGTGA 1380 0.4254 MNLSNWIRNRRNEQRNRRQEKLSGKKKDLQEFLNDLQDWELNKPSKTSNSRIKMHQRQKSGSTSRNSEIAANTGASRSPNNYGANLVGVSHAAEDVPDAASEKELGNEYFKQKKFKEAIDCYSRSIAFTPSAVAYANRAMAYLKLKRFREAEEDCTEALNLDDRYIKAYSRRATARKELGKLKGSMEDAEFALRLEPNNQEVKKQYMEAKSLYEEEILAKATGALRRSVEGGQKPRKSETSHGSVPLSSSTTQKSRVTEVQDQAKENGHQSLVSEKDRNITDVAKSRVEGSVGALRDGVESTDKVRKQVLGASVQELASRAASRALVEAAKNITPPSSAYQFEASWRGFSGDQSLQARLLKTVTPSNLPQIFKDALSATLLVDIIKCISSFFKEEMDVALSYLDHLTKVSRFDLLIMCLSSSEHDGLVMIYDRLCNLYIVDQRFYFTGTWSVNGRTPKS* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g02013 459 ProSiteProfiles TPR repeat profile. 99 132 IPR019734 GO:0005515
Pte18g02013 459 MobiDBLite consensus disorder prediction 226 275 - -
Pte18g02013 459 MobiDBLite consensus disorder prediction 41 83 - -
Pte18g02013 459 MobiDBLite consensus disorder prediction 238 258 - -
Pte18g02013 459 MobiDBLite consensus disorder prediction 259 275 - -
Pte18g02013 459 Gene3D Tetratricopeptide repeat domain 89 197 IPR011990 GO:0005515
Pte18g02013 459 MobiDBLite consensus disorder prediction 1 25 - -
Pte18g02013 459 SMART tpr_5 99 132 IPR019734 GO:0005515
Pte18g02013 459 SMART tpr_5 133 165 IPR019734 GO:0005515
Pte18g02013 459 SMART tpr_5 166 199 IPR019734 GO:0005515
Pte18g02013 459 Pfam Tetratricopeptide repeat 132 162 IPR001440 GO:0005515
Pte18g02013 459 Pfam Tetratricopeptide repeat 103 127 IPR001440 GO:0005515
Pte18g02013 459 SUPERFAMILY TPR-like 97 210 IPR011990 GO:0005515
Pte18g02013 459 Coils Coil 22 42 - -
Pte18g02013 459 PANTHER OS05G0129900 PROTEIN 19 434 - -
Pte18g02013 459 MobiDBLite consensus disorder prediction 10 25 - -
Pte18g02013 459 Pfam Potential Monad-binding region of RPAP3 335 423 IPR025986 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g02013 Pte-Chr18 30540040 30545379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g02013 94 214 Calmodulin-binding Proteins AT3G25230 33.577 2.69e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g02013 K23002 - qsa:O6P43_007424 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g02013 18 30540040 30545379 Pte18g02013 18 30540040 30545379 RCT