Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01989 ATGCCACTGTATGAGCTCTATCGAATGGCTAAAGCAAATGCCAATTCTTCTCAGGATCTGAACCCTCCATGTTCAAGTGGGCAATCATCGTTAGCTGAGAATGACCTGTGCGAACTTGTGTGGGAAAATGGTCAGATTTTGGTGCAAGGACATTCGAACACCCCTAAAAGAGCTGCAGCATCCAAGAGCTTGCCATCTCAATGTTTGCCATCTTATAGTCCCAGGGCAAGAGACAGGCATATAGGAAATAGTTGCATTTCAAGGACTGGAAAGTTTGGGGAATTTGAGTCTGTAATTGATGATATCCCCATGTCAGTGCCTTCCAGTGACATGGACTTCCATCAAGATGAAGACTTGGTACCCTGGTTGAGTTATGCAATGAACCATTCCCAGCACCATGGATATAGTTCTGAGTTGTTGCCTGAATTATCTGTTGTAACTTCAAATGAGCTCTCTCACTGCAATAACTTTTCACTAATTGATAAAAGAAGCAGCGATAGTCATGCAATTCGAAATTCTCATAAGCATTATGGCCATGATGGTGGGGTTTCTATCCTTGATTCTAGCTCAAGCCGGCTACACCATTCTTCATCACTTCAAAGCCAAACATCCATTACTTCTCTTAGACCAAGAGAACCTGAGATTCAAAATAAGGAAAGTAATGGACAGAGCCATCTTTTTCCCGAAAATCTGACTCAGGTTCGACCCACTCGTGGTTTTTCTGACTTTAAGATGCAGACCCAAGATTTAAAATTACCTAGTAGTAGCTCCACTATGATGAATTTCTCTCATTTTGCACACCCTGCTGCGCTTCTGAGAAATAATCTCAAGACAACTGGTGCCACGTGTGGATTATCTTCTGCTAGAACTGATACTGTGGCGAGCAAGGCTAAGGATTTTACAGCACGTAGCAAACATATTCCCATATCAACACCAATTGAGTCTAACAATGGTAATGCAAATAAGTCGACTTCTCAAGCTACCAAGCAGCCATCCAAAGTTGATCTACCACTACCACCAATGGAGTCGAAACCTGACCAACAGCGTGCTGCACCCGTCAAACAATCTGAGCCTGTTGGTCAAACTGATGCGGCAAAGGATGAACAAGCTTGCAGTCAAATCCCTGTGGAAAATGCAAGAAAAGGAGTGACTGATGGTGAAAAGAGTATCGAGCCAGCAGTAGCATCTTCGGTCTGTTCAGGGAATAGTGTGGAGAAGGCTTCTGAGGATCCAGTCCAGCATAAAAAGCGAAGAAGTCGTGATAATGATGAATCTGAATGCCCTAGTGAAGATGTGGAAGAAGAATCCGTGGATGTAAAACATTTGGCTGCTGCTCGAGGAGGTCTCGGTTCTAAGAGAAGTCGAGCAGCAGAAGTACATAATTTATCTGAAAGGAGGCGGAGGGACAGGATCAATGAGAAGATGCGTGCACTACAAGAGCTTATACCACACTGCAATAAGGTTGCCCTTCTCATTTGTTTTTCTTCTTCTATTCAAAGATATGCTAGATTAAATTGCCTAAATTGCATGATCGATCTAGTTTTCAAATCAAGTGGTTTCAATTAG 1566 0.4291 MPLYELYRMAKANANSSQDLNPPCSSGQSSLAENDLCELVWENGQILVQGHSNTPKRAAASKSLPSQCLPSYSPRARDRHIGNSCISRTGKFGEFESVIDDIPMSVPSSDMDFHQDEDLVPWLSYAMNHSQHHGYSSELLPELSVVTSNELSHCNNFSLIDKRSSDSHAIRNSHKHYGHDGGVSILDSSSSRLHHSSSLQSQTSITSLRPREPEIQNKESNGQSHLFPENLTQVRPTRGFSDFKMQTQDLKLPSSSSTMMNFSHFAHPAALLRNNLKTTGATCGLSSARTDTVASKAKDFTARSKHIPISTPIESNNGNANKSTSQATKQPSKVDLPLPPMESKPDQQRAAPVKQSEPVGQTDAAKDEQACSQIPVENARKGVTDGEKSIEPAVASSVCSGNSVEKASEDPVQHKKRRSRDNDESECPSEDVEEESVDVKHLAAARGGLGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKVALLICFSSSIQRYARLNCLNCMIDLVFKSSGFN* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01989 521 SMART finulus 461 507 IPR011598 GO:0046983
Pte18g01989 521 Pfam Helix-loop-helix DNA-binding domain 459 483 IPR011598 GO:0046983
Pte18g01989 521 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 455 504 IPR011598 GO:0046983
Pte18g01989 521 Gene3D - 450 503 IPR036638 GO:0046983
Pte18g01989 521 MobiDBLite consensus disorder prediction 171 210 - -
Pte18g01989 521 MobiDBLite consensus disorder prediction 305 438 - -
Pte18g01989 521 MobiDBLite consensus disorder prediction 184 210 - -
Pte18g01989 521 MobiDBLite consensus disorder prediction 408 425 - -
Pte18g01989 521 MobiDBLite consensus disorder prediction 308 332 - -
Pte18g01989 521 PANTHER TRANSCRIPTION FACTOR PIF3 1 488 IPR044273 GO:0003700|GO:0006355
Pte18g01989 521 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 452 487 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01989 Pte-Chr18 30377846 30381194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01989 1 520 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 33.017 1.48e-52 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte18g01989 HLH 8.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01989 K12126 - qsa:O6P43_007367 427.172