Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01979 ATGTCCTCAGTCAAGGATCAGCTTGATATTTCCAAGCTGGGTTTGCCTCAACGCGTTGTCGACTCGCTGCAGAAACGTGGGATTTCTGAGCTTTTTCCTATTCAAAGGGCCGTGTTGGTTCCTGCATTAGAAGGTCGAGATATAATTGCTCGTGCAAAGACTGGCACAGGGAAAACGCTAGCTTTTGGTATCCCAATTATTAAGCGCCTTAGTGAACATGATGAAGGAACGAATATGCAAAGGCGGGGTCGCCTTCCAAGACTACTTGTTCTTGCACCTACCCGGGAGTTAGCAAAGCAAGTAGAGAAAGAGATTAAAGATTCTGCTCCATATTTAAGTACAGTCTGTGTCTATGGTGGAGTTTCTTATGTGACACAACAAAATGCTCTCTCCCGAGGTGTTGATGTCGTGGTTGGAACTCCTGGTAGAATAATTGATCTTATAAACGGGAAAAGCCTCAAACTGAGTGAAGTTCAATATCTAGTCCTCGATGAAGCAGATCAGATGCTCGCGGTTGGGTTTGAGGAGGATGTGGAACTAATTCTAGAGCAGCTTCCATCTAAGCGGCAGAGCATGCTTTTCTCAGCAACCATGCCGGGATGGGTGAAGAAACTGGCACGGAAGTATTTGGACAATCCATTGACTATTGATTTGGTTGGTGATCAAGATGAAAAGCTTGCTGAAGGGATCAAACTTTATGCTATATCAGCAACTGCAACTTCGAAGCGGACCATTCTTAGTGATCTGATCACGGTTTACGCGAAGGGTGGAAAGACTATTGTTTTTACTCAGACAAAGAGAGATGCTGATGAAGTATCACTGGCATTGTCAAATAGTATAACTTCTGAAGCATTGCATGGGGATATATCCCAACACCAGAGAGAGAGAACATTGAATGGTTTTCGGCAAGGGAAGTTCACTGCACTTGTCGCAACAGATGTTGCAGCTCGAGGACTTGATATCCCTAATGTTGATTTGGTTATCCACTATGAGCTTCCCAATGATGCAGAAACATTCGTGCATCGCTCTGGCCGTACTGGCCGTGCTGGAAAAGAAGGTACTGCCCTTGTCATGTACACCAGCAGCCAGAGGAGAACAGTAAGGTCTCTCGAGCGTGATGTGGGTTGCAAGTTTGAGTTCATTAATCCACCAGCTATGGAAGAGATTTTGGAGTCATCTGCCGAGCAAGTTGTTGCTACACTCAAAGGAGTTCACCCAGAATCTATAGAGTTTTTCACTCCAACTGCAGAAAAATTGATCCAAGATCAAGGAACAACTGCACTTGCTGCTGCATTAGCACATTTGACTGGATTCTCTTGCCCACCTTCATCGCGGTCTCTTATAAATCATGAGCAGGGATGGGTAACATTGCAATTGACTCAAGATTCAGCCTATTCAAGAGGGTTTTTTTCTGCTAGAGCTGTCACCGGCTTGCTCTCTAGTCTTTATCCTCCAGCTGCTGATGAAGTCGGAAAGATACATTTAATTGCTGACGAAAGAGTTCAGGGAGCAGTTTTTGATCTTCCAGAGGACATAGCCAAAGAGTTGCTGGCTAAGCAAATAGAACCTGGATACACAATTTCAAAGATCACAAAGTTACCTGCGTTGCAAGACGATGGGCCTCCTAGTGATTACTATGGCAAGTTTTCTGGCAGAGACCGAAATATCCGAAGAGGCTCTAGGGACAGGAGAGGGTTTAGTGCACCACGAGGTTGGGTTGGCGATGATTCAGATGATGACTTCAATAAATCATATGGTAGAAGTGGCGGACGAAGTTTTAGAGGTGGTAGAAACAATGGTGGCCGGGCAAGAGGTGGTGGCGACAGTTGGCTGATAGGAGATAGGAGGTCAAACAGATCATCATCACGAGACAGAAGTTTTGGTGGTTCTTGTTTTGTCTGCGGTGAATCTGGGCACCGAGCTGCAGACTGCCCGAACAACTAG 1944 0.4547 MSSVKDQLDISKLGLPQRVVDSLQKRGISELFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIIKRLSEHDEGTNMQRRGRLPRLLVLAPTRELAKQVEKEIKDSAPYLSTVCVYGGVSYVTQQNALSRGVDVVVGTPGRIIDLINGKSLKLSEVQYLVLDEADQMLAVGFEEDVELILEQLPSKRQSMLFSATMPGWVKKLARKYLDNPLTIDLVGDQDEKLAEGIKLYAISATATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSITSEALHGDISQHQRERTLNGFRQGKFTALVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGRAGKEGTALVMYTSSQRRTVRSLERDVGCKFEFINPPAMEEILESSAEQVVATLKGVHPESIEFFTPTAEKLIQDQGTTALAAALAHLTGFSCPPSSRSLINHEQGWVTLQLTQDSAYSRGFFSARAVTGLLSSLYPPAADEVGKIHLIADERVQGAVFDLPEDIAKELLAKQIEPGYTISKITKLPALQDDGPPSDYYGKFSGRDRNIRRGSRDRRGFSAPRGWVGDDSDDDFNKSYGRSGGRSFRGGRNNGGRARGGGDSWLIGDRRSNRSSSRDRSFGGSCFVCGESGHRAADCPNN* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01979 647 CDD SF2_C_DEAD 230 359 - -
Pte18g01979 647 Pfam DEAD/DEAH box helicase 32 205 IPR011545 GO:0003676|GO:0005524
Pte18g01979 647 Pfam Helicase conserved C-terminal domain 242 350 IPR001650 -
Pte18g01979 647 MobiDBLite consensus disorder prediction 550 585 - -
Pte18g01979 647 FunFam Nucleolar RNA helicase II 238 428 - -
Pte18g01979 647 ProSiteProfiles Zinc finger CCHC-type profile. 631 646 IPR001878 GO:0003676|GO:0008270
Pte18g01979 647 CDD GUCT_Hera 444 524 - -
Pte18g01979 647 SUPERFAMILY Retrovirus zinc finger-like domains 618 646 IPR036875 GO:0003676|GO:0008270
Pte18g01979 647 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 39 216 IPR014001 -
Pte18g01979 647 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 6 514 - -
Pte18g01979 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 371 IPR027417 -
Pte18g01979 647 Gene3D - 596 647 - -
Pte18g01979 647 MobiDBLite consensus disorder prediction 539 629 - -
Pte18g01979 647 SMART helicmild6 270 350 IPR001650 -
Pte18g01979 647 Gene3D - 233 429 IPR027417 -
Pte18g01979 647 Gene3D - 9 220 IPR027417 -
Pte18g01979 647 FunFam ATP-dependent RNA helicase RhlE 2 219 - -
Pte18g01979 647 Pfam GUCT (NUC152) domain 437 537 IPR012562 GO:0003723|GO:0004386|GO:0005524
Pte18g01979 647 CDD DEADc 19 217 - -
Pte18g01979 647 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 245 405 IPR001650 -
Pte18g01979 647 Pfam Zinc knuckle 630 646 IPR001878 GO:0003676|GO:0008270
Pte18g01979 647 SMART c2hcfinal6 630 646 IPR001878 GO:0003676|GO:0008270
Pte18g01979 647 SMART ultradead3 27 233 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01979 Pte-Chr18 30307645 30313986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01979 34 372 Eukaryotic Initiation Factors Gene Family AT1G72730 37.791 6.04e-64 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01979 - - qsa:O6P43_010955 991.104