Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01971 ATGAAGAAAATGAAGCTGATTCTGCTGTTGCTATGCTGCACTTGTCTAGTAAATCTAGTTGTTGGGTTTGTTTTAAATGGATCCCTGTATGAGAGAATGGGTGCGCTTTCCTACTTGGAGAATGACATGGCTATGGCGTCCGCTTCTGGAGCTACATCGCCCTCTTCACCCAAGCCCCTCATGGTCGACCTTACTCTCATTCAGGGAGTAGCTTCCAAAGGAGCTGTCTGTTTGGATGGAACACGACCTGGCTACCATTTGCATCAGGGACATGGTTCGGGTGCAAACAGTTGGCTCATTCAGTTGGAGGGAGGTGGTTGGTGCAACACTATCAGGAATTGTGTTTACCGGAAAACCACACGTCGTGGTTCATCAAAATATATGGAGAAACAGATACCATTTACAGGGATTTTAAGCAACAAAGCTGAAGAGAACCCTGATTTCTTCAATTGGAACAGAGTCAAGCTACGTTATTGCGATGGTGCATCTTTTAGTGGAGACAATCAGGATGAGGCCTCTCAACTTAATTTTCGAGGACAAAAGATATGGTTGGCTGCCATGGAAGAATTCATGTCAAAGGGAATGAAGAATGCTGAGCAGGCTCTTCTTTCTGGATGTTCTGCTGGGGGACTTGCATCCATATTACATTGTGATGAGTTCCGGGACTTGCTTCCAAAATCTACCAAAGTGAAATGTCTAAGTGATGCAGGATTTTTTCTCGATGCAACTGATGTATCTGGTGGGCGGACCTTGAGGAATATGTATGAAGGTGTGGTTAGGTTACAGGAAGTGCAAAAAAATCTACCCACTAGTTGTCTGGACCATCTGGATCCAACATCGTGCTTCTTTCCTCAGAATGTGGTTGCAAATGTTAAGACTCCATTGTTTCTTCTCAATGCAGCCTACGACGCATGGCAGCTTCAAGCAAGTTTAGCTGCACCTACGGCTGACCCTAATGGCTCTTGGAGTGACTGCAAATCGAACCATGCCCAATGTAATGCATCTCAAATTCAGTTCCTCCAAGACTTCAGGAATCAGATGCTTGGCGCTGTCAAAGATTTCTCAAGGGCAAACCAAAATGGGTTGTTCATAAATTCCTGTTTTGCTCATTGCCAATCTGAGAGACAAGATACATGGTTTGCTGATGATTCTCCCATGATAAGAAACCAGCCAATAGCAATAGCAGTTGGAAACTGGTTTTTTGATCGGGAAGCTGTCAAAGCCATCGATTGCGCATACCCCTGTGACAACACCTGCCATAATCTGGTCTTCAAATGA 1278 0.4468 MKKMKLILLLLCCTCLVNLVVGFVLNGSLYERMGALSYLENDMAMASASGATSPSSPKPLMVDLTLIQGVASKGAVCLDGTRPGYHLHQGHGSGANSWLIQLEGGGWCNTIRNCVYRKTTRRGSSKYMEKQIPFTGILSNKAEENPDFFNWNRVKLRYCDGASFSGDNQDEASQLNFRGQKIWLAAMEEFMSKGMKNAEQALLSGCSAGGLASILHCDEFRDLLPKSTKVKCLSDAGFFLDATDVSGGRTLRNMYEGVVRLQEVQKNLPTSCLDHLDPTSCFFPQNVVANVKTPLFLLNAAYDAWQLQASLAAPTADPNGSWSDCKSNHAQCNASQIQFLQDFRNQMLGAVKDFSRANQNGLFINSCFAHCQSERQDTWFADDSPMIRNQPIAIAVGNWFFDREAVKAIDCAYPCDNTCHNLVFK* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01971 425 PANTHER NOTUM-RELATED 9 421 IPR004963 GO:0016787
Pte18g01971 425 Pfam Pectinacetylesterase 58 404 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01971 Pte-Chr18 30251699 30255841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01971 1 424 Carbohydrate Esterase AT3G62060 66.435 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01971 K19882 - qsa:O6P43_007338 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01971 18 30251699 30255841 Pte15g00149 15 1081267 1085937 RCT
Pte18g01986 18 30358043 30361832 Pte18g01971 18 30251699 30255841 RCT
Pte18g01971 18 30251699 30255841 Pte18g01986 18 30358043 30361832 RCT
Pte18g01971 18 30251699 30255841 Pte18g01971 18 30251699 30255841 RCT
Pte15g00149 15 1081267 1085937 Pte18g01971 18 30251699 30255841 RCT
Pte3g00617 3 4848075 4852036 Pte18g01971 18 30251699 30255841 RCT