Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01969 ATGGGAAGGCACTCATGCTGCTATAAGCCGAAAATAAGGAAAGGCCTCTGGTCACCTGACGAAGATGAAAAGCTCTTGAGACATATTAACAAGTACGGCCATGGATGTTGGAGCTCTATTCCGAAGCAAGCTGGTTTGAAGAGGTGTGGCAAGAGCTGCAGATTAAGATGGATCAACTACTTGAGGCCTGATTTGAAGAAAGGCACAATCTCAAGTGAAGAAGAGAATATTATCATTGAACTTCATGCAGTCCTTGGGAATAGGTGGTCTCAAATTGCAACCCAATTGCCAGGGAGGACTGACAATGAAATAAAAAACTTATGGAATTCTAGCTTAAAGAAGAAGCTCAAGCAAAGAGGAATCGACCCTGTCACTCACCAACCCATTTCTGAGGTTGAAAATCGACTAGATAAAGATGCAGTAGCTACGAGACACGAGAAAGCATCACAACTATCGAATGAACTTAACCTTCACCAGCAAGACAATTGTCCATCAGAGTTAATCACGCATGGTGTGAGATCATCTTCACTTACTACACAAGCCTATCCATTTGAGACAGAAGGTCGTTCTTCCAGCTCCAAACCGATTCACAGCAGAAGTAACAATAGTTTTCTGTCCCATTCTTCCAGCAAGGAATACTTAAGGAAGTTCTTTACGTCCCATTCCCATCAAGAAAGCTCCAATACAAATTTCCGGCCTTTAGCTTCAGCAGAAGATCTTCCACTGCATTTGAAATTTGCATCCTCCTCCTCACTCTCAACAAACACTGACCCTTCGTGCTGGTATGATCAAACTGCAAAAACATTCAACATGAATTCTAAATATAGTTCCAACACAACTAGAGCTGTTTCAAGCTCAACTAGTTCATTTCCTTCTATCTCTATTTGCTACCAGCCTTTATTGACATTCCCTTCAGAAGATATTCATGTGTCCTCTTGCTCTCTAAATGGACCTGATCGTTATTGGGGGGAATCCATTACCTCCAACAATTGCAGGACCAGCACAAATACAAGCAACAGGGACACAGAGTTGCAAGGCCACAGTCCCTTCTGGGAGAACAGGTTGAGCTCTTGGGGATTGACAGAACCTAGCTTGTCTGAAGAAATAGCGCATATTGGTGTCATGAGGAACCAACAAGGAATAGTCAGTTCGGTTGAATCACTTCCCAATGCTATGAGTCTAGGTGCCATACAAGCTCAATCTCCACTGTCATTTTGTAACGTTATGAAGCCAGACAGATTTTTGGTATCTGATACATTGGGGGCTATATTTCTGCAAAAGCAGTAA 1287 0.425 MGRHSCCYKPKIRKGLWSPDEDEKLLRHINKYGHGCWSSIPKQAGLKRCGKSCRLRWINYLRPDLKKGTISSEEENIIIELHAVLGNRWSQIATQLPGRTDNEIKNLWNSSLKKKLKQRGIDPVTHQPISEVENRLDKDAVATRHEKASQLSNELNLHQQDNCPSELITHGVRSSSLTTQAYPFETEGRSSSSKPIHSRSNNSFLSHSSSKEYLRKFFTSHSHQESSNTNFRPLASAEDLPLHLKFASSSSLSTNTDPSCWYDQTAKTFNMNSKYSSNTTRAVSSSTSSFPSISICYQPLLTFPSEDIHVSSCSLNGPDRYWGESITSNNCRTSTNTSNRDTELQGHSPFWENRLSSWGLTEPSLSEEIAHIGVMRNQQGIVSSVESLPNAMSLGAIQAQSPLSFCNVMKPDRFLVSDTLGAIFLQKQ* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01969 428 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte18g01969 428 MobiDBLite consensus disorder prediction 183 205 - -
Pte18g01969 428 FunFam Myb transcription factor 11 67 - -
Pte18g01969 428 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte18g01969 428 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Pte18g01969 428 FunFam MYB transcription factor 68 129 - -
Pte18g01969 428 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte18g01969 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pte18g01969 428 CDD SANT 17 61 IPR001005 -
Pte18g01969 428 SMART sant 66 114 IPR001005 -
Pte18g01969 428 SMART sant 13 63 IPR001005 -
Pte18g01969 428 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte18g01969 428 Gene3D - 11 67 - -
Pte18g01969 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pte18g01969 428 Gene3D - 70 147 - -
Pte18g01969 428 CDD SANT 71 112 IPR001005 -
Pte18g01969 428 PANTHER MYB DOMAIN PROTEIN 55 1 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01969 Pte-Chr18 30241158 30242963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01969 1 149 MYB Transcription Factor Family AT1G09540 79.195 3.31e-84 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte18g01969 Myb_DNA-binding 4.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01969 K09422 - qsa:O6P43_007336 424.861