Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01967 ATGAGAAAGCTAGGTGACCGCAGTGAGAGTCAAATATACACATCTACCCAGCAGGGTGAAGCTTCCTCTTCACATACACTACTCAATGGTGGACTCGAAATGAAATACCAAATGCACTTCCAGGATGCAGAAGCTGATAGAAATACTGGTGTGAATTTCTCCGTCTTCTCAAGAATAGCAGGTGTTGTTAAATGCAAAGATCGGTGCAGCAGGGTAGCAGGGCCAAGCAGCAATTCTGTAGTGTCAAGATTTGAGGAGATAACAGCTGACAATGATTATGAGAAGGCATCGCCAGCTGAAGGAAACGGAAAACTTGCAGAACAATCGGCTGAAGGTTCAAACAGTTGCACTCTTCCTCAGTTTCAAAGAGAAACAATAGTTTCTAAGGCAAAAGAGAAGGAAAAAGTGGTAGGTAAAACTTGTAAGGAATCAATTGCAGATGGTCACTTTGAAGCTCTTGATATGCTTCGAATGGACACACTTCATCATCAGCTTCTCGCCGGTCAGTCTTCAGATAAGGAATCTGATCATCAAGATAAGGAAAACCCTCATGCCAGAGCAGATAAGACGGTGTATATGGTTGCATCTTCTGTTGGCTCTCTTGAAGCTTCAAATGCTCAAACCCATTCAAAATACAGAAATAAAGTTTGCGTGCAGCATTATCATCAACCAGGAGGCAGAAGAAAATATTTGCAGACTGGGGATGATACTGAAGTAAAGAGAACCCGTCATTCGAAAACTCATAATTTCTCCGAAAAGAAACGAAGGGATGAGATCAGAAAGAAGATGCGGACGCTACAACAAATTGTACCCAGCTGCAAGAAGATGGAAAAAATTTATGTACTTGATAAGACAATAGAATATCTGAAGACCCTTCAACTTCAATTACAGATTATGTCAATGGGAAGAGGGTTGTATATGCGTCCTGTGAATACGATGATACCTACAACTACAAGCGTGGCTCCAGAATCGACTCAGTCCTTCAACCAAATGACTTCAGGGATGGATCCGATCAATGGCTCAAGAATGTTTTGCAGCCTAACTCAATTTCCTTGTCTGCAAGTGCGCCCCACTACAGCATCTGGGATACCAGGGAACATGTTTCATATGTTTGGGTTTCCATGGCAAATGCCTGTACCCTTATCAATTCCTCAAGCATCTCACATTCCTGGTGTTGGAAACCCAGCAAAACAATCAGATCCAGTACCCCATGTTTCAGGAGCAACAAATCAGCTGGGAAAACACGATTCTTCTCCTTCCGAAACGATTTTCAGAAACTTCATTCCCTCTGATGTAAATGCATTGCATCACTAA 1314 0.4231 MRKLGDRSESQIYTSTQQGEASSSHTLLNGGLEMKYQMHFQDAEADRNTGVNFSVFSRIAGVVKCKDRCSRVAGPSSNSVVSRFEEITADNDYEKASPAEGNGKLAEQSAEGSNSCTLPQFQRETIVSKAKEKEKVVGKTCKESIADGHFEALDMLRMDTLHHQLLAGQSSDKESDHQDKENPHARADKTVYMVASSVGSLEASNAQTHSKYRNKVCVQHYHQPGGRRKYLQTGDDTEVKRTRHSKTHNFSEKKRRDEIRKKMRTLQQIVPSCKKMEKIYVLDKTIEYLKTLQLQLQIMSMGRGLYMRPVNTMIPTTTSVAPESTQSFNQMTSGMDPINGSRMFCSLTQFPCLQVRPTTASGIPGNMFHMFGFPWQMPVPLSIPQASHIPGVGNPAKQSDPVPHVSGATNQLGKHDSSPSETIFRNFIPSDVNALHH* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01967 437 Gene3D - 238 301 IPR036638 GO:0046983
Pte18g01967 437 MobiDBLite consensus disorder prediction 169 187 - -
Pte18g01967 437 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 246 314 IPR036638 GO:0046983
Pte18g01967 437 MobiDBLite consensus disorder prediction 392 423 - -
Pte18g01967 437 SMART finulus 249 298 IPR011598 GO:0046983
Pte18g01967 437 MobiDBLite consensus disorder prediction 92 117 - -
Pte18g01967 437 PANTHER TRANSCRIPTION FACTOR PIF3 21 422 IPR044273 GO:0003700|GO:0006355
Pte18g01967 437 MobiDBLite consensus disorder prediction 1 24 - -
Pte18g01967 437 MobiDBLite consensus disorder prediction 168 187 - -
Pte18g01967 437 MobiDBLite consensus disorder prediction 403 423 - -
Pte18g01967 437 MobiDBLite consensus disorder prediction 223 254 - -
Pte18g01967 437 Pfam Helix-loop-helix DNA-binding domain 246 293 IPR011598 GO:0046983
Pte18g01967 437 MobiDBLite consensus disorder prediction 8 24 - -
Pte18g01967 437 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 243 292 IPR011598 GO:0046983
Pte18g01967 437 MobiDBLite consensus disorder prediction 229 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01967 Pte-Chr18 30231799 30236645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01967 240 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 53.947 5.19e-22 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte18g01967 HLH 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01967 K12126 - qsu:111988490 196.438