Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01958 ATGGGGACAGATAACGGTGTGGACAAAGATGCACCAACAAACTCAGAAAATGAGAAAACAAAGTCTGTTCCATTTTTTAAGCTGTTTTCATTTGCAGATTCCATTGACGTTCTATGGATGGTCTTGGGCAGCATAGGAGCCATTGGGAATGGTTTGGCTTTACCCCTCATGACTTTACTATTTGGAGAAATAATCAATTCTTTCGGAAGCAACCAGCTCGACGTGAATGTTCTTGTCAGATCAGTTACAAAGGTATCTCTGAAATTTATTTACTTGGCAGTGGGGAACGGTGTAGCAGCATTCCTCCAGGTGGCTTGCTGGATGGTCACTGGGGAGAGACAGGCAGCAAGAATAAGAGGATTGTATTTGAAAAGTATACTGAGACAAGATGTCGGTTACTTCGATAAGGAAGCAGACACCGGGGAGGTGATTGGGAGAATGTCAGGAGACACTGTTCTAATACAAGATGCCATGGGCGAGAAGGTTGGGAAATTTCTTAGCCTGATATCAACATTCGTAGGGGGCTTTGCGATAGCATTTGTCAAAGGGTGGCTTCTTACTCTTGTCTTGTTGTCCTCTCTTCCTCTTCTTGCCATCTCTGGTGCGGTCATGGCCATAACCATAGGCAAAATGACATCTCGAGGCCAATCTGCTTACTGCAAAGCTGCAAATCTTGTTGAACAGACAATAGGCTCAATTAGAACGGTTGCATCCTTCACTGGAGAGAAGCATGCTATATCTAGCTACAGCAAGTATCTAGTAGATGCATACCGATCAGGAGTTAGTGAAGGCTTCGCAGCTGGACTTGGGATTGGGATGGTGATGTTTCTTGTTTTTTGCACCTACTCATTGGCTGTATGGTTTGGCGCTAAGTTAGTAAGAGAAAAGGGATACGATGGTGGTAGTGTTATTAATGTGATTCTCGCCGTGTTGACTGCTTCCATGTCATTGGGTCAGGCATCTCCTTGCATCAGTGCATTCGGTTCTGGTAAAGCTGCAGCATACAAAATGTTTGAAACTATAGAGAGGGAACCAGAGATAGATCCTTACGACACTAAGGGGCAAATCTTAGAAGATATTCGGGGTGAGATAGAGTTGAAGGATGTTTATTTCAGCTATCCAGCTAGACCAGATGAGCAGATATTCAATGGATTCTCTCTATATATACCCAGCGGCACAACTGCGGCTTTGGTCGGACAAAGTGGAAGTGGAAAATCGACAGTTATCAGTCTGGTTGAAAGGTTCTATGATCCGCAAGCAGGAGAAGTCCTTATAGATGGTATTCACCTCAAGGACTATCAACTTAGATGGATCAGAGGAAAAATTGGCCTTGTCAGCCAGGAACCTGTGTTGTTTGCATCAAGCATTAAGGATAACATCGCATATGGGAAAGATGGAGCCACACTTGAAGAAATAAGAGTAGCCACTGAGCAAGCAAATGCTGCCAAATTCATTGATAAACTGCCACAGGGATTAGACACGATGGTTGGAGAGCATGGAACTCAGTTATCTGGTGGACAGAAGCAGCGGATTGCCATTGCAAGAGCCATTCTGAAAGACCCTAGAATTTTACTATTAGATGAAGCTACAAGTGCACTGGATGCAGAGTCTGAGAGGATTGTGCAAGAGGCATTGGACAGAATCATGGTCAGCAGAACTACTGTTGTTGTGGCCCATCGGTTGAGCACTGTGAGAAATGCTGACATGATTGCTGTTATTCACAGAGGGAAGATGGTGGAGAAAGGTTCACATGTAGAGCTACTGGAGGATCCTGATGGTGCATACTCTCAGCTGGTGCGCTTGCAAGATATAAATAAGGAAGAAGAAGCACCGAATGGACCCAAAAAAACTCAAGCTTCCATAGGATCTGCTAGACATTCGAGCCAAAGTAATTCACTACTAAGAGCCATAAGTCGAGGATCATCAGCAGGAAATAGCAGCGGTCACTCATTTTCTGTTGCATTTGCTTTACCGACGGGAATCAGTGTTCCTGATCCTGAACTTGCATTACCAGGAACTGAAGAAGCTCCATCTGTCCCAATCCGCCGAATTGCCTACTTGAATAAACCGGAGATTCCAGTGCTGCTGATCGGATCCATTGCTGCTATAGTGAACGGTCTAGTACTTCCAATCTTCGGTGTACTTGCGTCCAAAATAATCAAAACATTTTTTGAGCCCCAAGAGGAAATGAAAAAGGATGCCAGGTTCTGGTCACTGATGTTTGTGGGCCTCGGCGTCGTATCAGTTGTGGTGATTCCTTCAAGAGGATACTTCTTCTCAGTGGCAGGGTCTAAATTAGTTCAGCGTATCAGATTGATGTGTTTTGAGAAGGTGGTCCACATGGAGGTCGGCTGGTTCGATCACCTAGACAACACAAGTGGTGCAATTGGTGCTAGACTTTCAGCAGATGCTGCAAGCATACGCGGTCTAGTTGGCGATGCTCTAGGACTTATGGTCCAAAATGCAGCAACGGCCATTGCTGGCTTGGTCATTGCTTTCACTGCAAGTTGGCAGTTGGCACTTATTGTACTGGCTTTGATTCCACTTATGGGATTGACTGGATTAATGCAAATGAAATTTATGAAAGGATTCAGCGACGATGCGAAGGCCCAGTACGAGGAAGCCAGTCAAGTTGCAAATGATGCAGTAGGAAGCATAAGAACAGTTGCTTCGTTCTGTGCTGAAGATAAGGTGATGGAGCTATACCAGGAGAAATGTGAAGGTCCAAGGAGGGCAGGGATGCGACAAGGATTGATCAGTGGAACTGGTTTTGGAAGCTCATACTTCTTGCTTTTCTGTGTTTACGGACTGAGTTTCTATGCAGGGGCAAAGCTTATTAAGGCTGGCAAAACAACATTTTCTGATGTATTTCAAGTTTTCTTCGCTTTGACAATGTCAAGCGTGGGGATGTCCCAAACTAGCTCTTTGGCTCCAGATAGTAGCAGAGCCAAGTCGGCTGTTGCTTCCATATTTGCAATAATAGATAGAAAGTCAGAGATAGATCCCAGTGATGAGTCTGGTACAACCTTAGATGAAGTGAAAGGAGAAATTGAGCTTCGCCATGTAAGCTTCAAGTACCCAGCTAGGCCAGACATCCAGATTTTCAGGGACCTCAGCTTGGCTATTCATTCTGGCAAGACAGTGGCCCTAGTTGGGGAAAGTGGAAGCGGTAAATCCACAGTGATTGCCTTGTTACAAAGATTTTATGATCCTGAGTCAGGTCAAATCACCCTGGATGGGATTGAAATCCAAAAATTCCAGGTGAAATGGTTGAGGCAACAGATGGGGCTGGTAAGCCAAGAGCCATTACTGTTCAATGACACCATCCGCGCAAATATTGCATACGGTAAGGGAGGAAATGCAAGTGAGTCAGAGATCCTAGCTGCAGCAGAATCAGCAAATGCTCACAAATTCATTAGTAGTTTGCATCAAGGATATGACACTGTAGTAGGAGAGCGTGGAATCCAACTATCAGGTGGACAAAAACAACGCGTAGCCATTGCACGTGCCATTATCAAAACTCCGAAGATTATGTTATTGGATGAAGCAACGAGTGCATTGGATGCTGAATCAGAAAAGGTTGTCCAAGACGCATTAGACAGAGTGAGTGTCAACCGGACTACAGTTGTGGTGGCACATCGTTTGTCAACCATCAAGAACGCAGATTTGATTGCTGTGGTTAAAAATGGTGTGATTGTGGAGAAAGGAAGGCACGAGAGCTTGATGAATAAAGAGGGGGGATTTTATGCTTCCTTGGTCGCACTGCATAACAGTGCTTCAACAGTGTAA 3789 0.4479 MGTDNGVDKDAPTNSENEKTKSVPFFKLFSFADSIDVLWMVLGSIGAIGNGLALPLMTLLFGEIINSFGSNQLDVNVLVRSVTKVSLKFIYLAVGNGVAAFLQVACWMVTGERQAARIRGLYLKSILRQDVGYFDKEADTGEVIGRMSGDTVLIQDAMGEKVGKFLSLISTFVGGFAIAFVKGWLLTLVLLSSLPLLAISGAVMAITIGKMTSRGQSAYCKAANLVEQTIGSIRTVASFTGEKHAISSYSKYLVDAYRSGVSEGFAAGLGIGMVMFLVFCTYSLAVWFGAKLVREKGYDGGSVINVILAVLTASMSLGQASPCISAFGSGKAAAYKMFETIEREPEIDPYDTKGQILEDIRGEIELKDVYFSYPARPDEQIFNGFSLYIPSGTTAALVGQSGSGKSTVISLVERFYDPQAGEVLIDGIHLKDYQLRWIRGKIGLVSQEPVLFASSIKDNIAYGKDGATLEEIRVATEQANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVSRTTVVVAHRLSTVRNADMIAVIHRGKMVEKGSHVELLEDPDGAYSQLVRLQDINKEEEAPNGPKKTQASIGSARHSSQSNSLLRAISRGSSAGNSSGHSFSVAFALPTGISVPDPELALPGTEEAPSVPIRRIAYLNKPEIPVLLIGSIAAIVNGLVLPIFGVLASKIIKTFFEPQEEMKKDARFWSLMFVGLGVVSVVVIPSRGYFFSVAGSKLVQRIRLMCFEKVVHMEVGWFDHLDNTSGAIGARLSADAASIRGLVGDALGLMVQNAATAIAGLVIAFTASWQLALIVLALIPLMGLTGLMQMKFMKGFSDDAKAQYEEASQVANDAVGSIRTVASFCAEDKVMELYQEKCEGPRRAGMRQGLISGTGFGSSYFLLFCVYGLSFYAGAKLIKAGKTTFSDVFQVFFALTMSSVGMSQTSSLAPDSSRAKSAVASIFAIIDRKSEIDPSDESGTTLDEVKGEIELRHVSFKYPARPDIQIFRDLSLAIHSGKTVALVGESGSGKSTVIALLQRFYDPESGQITLDGIEIQKFQVKWLRQQMGLVSQEPLLFNDTIRANIAYGKGGNASESEILAAAESANAHKFISSLHQGYDTVVGERGIQLSGGQKQRVAIARAIIKTPKIMLLDEATSALDAESEKVVQDALDRVSVNRTTVVVAHRLSTIKNADLIAVVKNGVIVEKGRHESLMNKEGGFYASLVALHNSASTV* 1263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01958 1262 PANTHER ABC TRANSPORTER B FAMILY 13 623 IPR039421 -
Pte18g01958 1262 Gene3D ABC transporter type 1, transmembrane domain 87 991 IPR036640 GO:0005524|GO:0016020
Pte18g01958 1262 Pfam ABC transporter 383 531 IPR003439 GO:0005524
Pte18g01958 1262 SUPERFAMILY ABC transporter transmembrane region 27 349 IPR036640 GO:0005524|GO:0016020
Pte18g01958 1262 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 364 600 IPR003439 GO:0005524
Pte18g01958 1262 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 329 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte18g01958 1262 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 337 - -
Pte18g01958 1262 FunFam ABC transporter B family member 1 1007 1257 - -
Pte18g01958 1262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1007 1253 IPR027417 -
Pte18g01958 1262 FunFam ABC transporter B family member 1 354 603 - -
Pte18g01958 1262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 602 IPR027417 -
Pte18g01958 1262 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 696 982 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte18g01958 1262 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1017 1254 IPR003439 GO:0005524
Pte18g01958 1262 CDD ABC_MTABC3_MDL1_MDL2 364 602 - -
Pte18g01958 1262 ProSitePatterns ABC transporters family signature. 503 517 IPR017871 GO:0005524|GO:0016887
Pte18g01958 1262 CDD ABC_MTABC3_MDL1_MDL2 1017 1253 - -
Pte18g01958 1262 FunFam ABC transporter B family member 9 27 359 - -
Pte18g01958 1262 ProSitePatterns ABC transporters family signature. 1157 1171 IPR017871 GO:0005524|GO:0016887
Pte18g01958 1262 FunFam ABC transporter B family member 1 675 983 - -
Pte18g01958 1262 FunFam ABC transporter B family member 9 984 1006 - -
Pte18g01958 1262 Pfam ABC transporter transmembrane region 695 967 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte18g01958 1262 Pfam ABC transporter transmembrane region 42 315 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte18g01958 1262 SUPERFAMILY ABC transporter transmembrane region 677 1002 IPR036640 GO:0005524|GO:0016020
Pte18g01958 1262 CDD ABC_6TM_Pgp_ABCB1_D2_like 685 1000 - -
Pte18g01958 1262 MobiDBLite consensus disorder prediction 605 628 - -
Pte18g01958 1262 SMART AAA_5 1044 1237 IPR003593 GO:0016887
Pte18g01958 1262 SMART AAA_5 391 577 IPR003593 GO:0016887
Pte18g01958 1262 Pfam ABC transporter 1036 1185 IPR003439 GO:0005524
Pte18g01958 1262 Gene3D - 1007 1261 IPR027417 -
Pte18g01958 1262 Gene3D - 362 620 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01958 Pte-Chr18 30179621 30184848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01958 1 1261 Calmodulin-binding Proteins AT2G36910 43.956 0.0 1071
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01958 K05658 - qsa:O6P43_010926 1932.92