Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01946 ATGGCTTTTAAGAGCTGGAGCCAGTTCATTTTGCTGTCATTGCTTTTCTTTTGCTCCTCGTCACTGAGCTCAGTTGAGGAGAACGACTATAGCACGTGGATATCTTGGAACGTTCAAAATTACCAGAAGAAAAATGTTAAGGCGATAGATTCAAACACGGCAACGTTGGGTGCAGGGAAAAAAGTTGATGTGAGACTACAGAAGGCTGAGATGAACAAAGTAAGGGTGATAGTAAGCGGAGATGGTACAGGAGATTTTAAGACTATTGAAGAAGCTGTCAACAGCATCCCATCTCCCAACAATAGGAGAGTGCAGTTATTCATTAGACCAGGAATTTATAGGGAAAAGATTATGATCCCCAGGAGCTTGCCGTTCGTTACATTCTTAGGAGACGCCATGGATCCACCAACCATTACTGGGAACAACACTGCATCAGCCGCAGGTAAGGATGGCAAGCCGCTAAGGACATTTCAAAGTGCAACTGTTGCTGTCGACGCTAATTATTTCGTGGCCATCAACATCAAGTTTGAGAACACGGCACCACATGTGGTTGGATCGAATGGAGGGCAGGCTGTGGCGGTTCGGATCTCAGGGACGAAAGCTGCATTCTACAATTGCAGTTTTTATGGGACTCAGGACACTCTGTACGATCACAAAGGTCTTCACTACTTCAGCAACTGCTTTATCCAAGGCTCCGTTGATTTTATCTTCGGCTCTGGCAGATCCCTCTACGAGGTCATTTTCATATTCAGGCTTATTAGCCATGCATATCACCATTACAGAATTTATCCTTATTTCATTGGATTGCAGAATTGCTATTTGAATTCCGTGACGAAGAAGGTGGCATCCATTACAGCTCAAAAGCGGACTAATGCATCTCTAGAAAGTGGGTTTTCCTTCAAAAACAGCACAATTACAGGTAGTGGGCAGGTTTATCTTGGAAGGGCATGGGGTGATTATTCCAGAGTCGTCTTTTCCTACACTTACATGGACAAGATTGTAATACCAAAAGGATGGAGCGATTGGGGGGACCAGAAACGTGACTCGGAAGTGTACTATGGGGAATACGAGTGTAGCGGTCCAGGGGCTAACTTGGCAGGGAGGGTGCCTTGGGTGCATATTCTGACAGACCAAGAGGCTCAACCATTCATTGGGATACACTATATCGAAGGAGATACTTGGCTGCCTCTAACCCCATAA 1200 0.4525 MAFKSWSQFILLSLLFFCSSSLSSVEENDYSTWISWNVQNYQKKNVKAIDSNTATLGAGKKVDVRLQKAEMNKVRVIVSGDGTGDFKTIEEAVNSIPSPNNRRVQLFIRPGIYREKIMIPRSLPFVTFLGDAMDPPTITGNNTASAAGKDGKPLRTFQSATVAVDANYFVAINIKFENTAPHVVGSNGGQAVAVRISGTKAAFYNCSFYGTQDTLYDHKGLHYFSNCFIQGSVDFIFGSGRSLYEVIFIFRLISHAYHHYRIYPYFIGLQNCYLNSVTKKVASITAQKRTNASLESGFSFKNSTITGSGQVYLGRAWGDYSRVVFSYTYMDKIVIPKGWSDWGDQKRDSEVYYGEYECSGPGANLAGRVPWVHILTDQEAQPFIGIHYIEGDTWLPLTP* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01946 399 Gene3D - 68 398 IPR012334 -
Pte18g01946 399 ProSitePatterns Pectinesterase signature 2. 229 238 IPR033131 -
Pte18g01946 399 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 65 395 - -
Pte18g01946 399 SUPERFAMILY Pectin lyase-like 74 398 IPR011050 -
Pte18g01946 399 Pfam Pectinesterase 76 245 IPR000070 GO:0030599|GO:0042545
Pte18g01946 399 Pfam Pectinesterase 270 392 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01946 Pte-Chr18 30097994 30100425 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01946 76 395 Carbohydrate Esterase AT5G47500 42.236 1.59e-87 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01946 K01051 - pop:7455411 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01946 18 30097994 30100425 Pte18g01946 18 30097994 30100425 RCT