Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01939 ATGATCTGTGCAAACAATGATAGACGAAGTAGAAGGGATAATGTATGTCGGCGATATGATGTGAATTACCACATCGAGTATTCTACCTTAGAGGGAATGATCTGTGCAAGCAATGATAGACGAAGCGGAAGAGAGAATGCATTTGCTGCTCTAATTGTTCTTTGTGGTTTGACCCCAAAATGGTATTCCATGGTCAAAAGCATTGAGACCCATGTAAATTTGGATGCCCAGAATTTTGTTTCTCAATTGATGTCCGAAGTCGAGCGCTCCTCAGAGCTGGTGCAACCTTTCAACCTTACCCCGACAAATCTATCTAGGTTTATCAATTCAAACCTCGATCTGAGATCTACAACCAATATAGAGACTCAGGTGGCCCCAATGTTGTTCCAAGCATCCATGGCACTACCCTTCCTGACCCAAATCACTTACATTGACACTGAAGACGGTCGTTTCTTTGCATATGACCTCGATGTACCTCAAGCGATATTTAACGTCGTCGTCCCCTCTTCTAATTATCCGAATGACCCATATCAAAGACTCCAGACCTCATACTGTGGCAGAAGTGTCAACCGTGACAGTGGAAAGTTAGACGATGATGCTTACCCAGTTTCTGTTACGATCAATGAGACCTGGTTTAAGAATGCACTAAACAGCCCCAACGGATATACCGCTGTGGTAGGAAAATGGACCAGTTCTGATGACCTTGTGTTCCTTAGCTCGGCTAGAATGGAAGGAAGGGGAATGCTTTGCTTGGGATTTGCTGTAGATGCCATTGCGAATTTTATCACCGCTAAAATCGGCAGTTATGGTGGCAAGCTATATCTGGCCACCACAGATGGAACAGTGCTAGTTCAAGGTCTCAAAGACACTCAGATGATGATCGTCAAAGGCAACGAGGTCTCGGTACAAATGATGAAATCAATAGATGGTGACCGACAAGTTAGTACTAGAACAGTGTCATGCAGCAACCACGACGGAGCTTCAGAGCCAACTATTCTGGATATTGACAACAAGGAGTACATGTTTTATTGTTCGCCCATTGATACGATGGGAGTTCAATCGGTGTATGCATTGGCTTTTGAACGAAATGGGTTGGTTAGTTTTGTTCGCAGTAGCAAGAAAGCAGGACTGAGGCTCTTGACCGCAATGATTCTCTTGATAATCATCTTCAGCGCCATTTTTGTGTTCATAATCATCAGATCAATAAGAATTGAGACGCATCTGTCTTCAAGTCTTACCAAACAAATGGAAGCAACTGAAAAGGCCGAGAGGAAAAGCACGAACAAGAGTATCGCCTTGGCCATTGCCACCCATGACATTCGTGGATCTCTCGCAGGCCTCACAGGATTGATAGACTCATCGCGTGACCAGGTTGCCTTGGATTCAGCAGTCGCAACAAACTTAAAACTCATGGATACTTGTGTTGAAGACTTACACGGACTACTGAATTCCATACTTGATACAAGCAAGATTGAGGCAGGCAAGATGCAATTGGATGAACAAGAATTTGACATATCCCAACTTCTAGAAGATATTGTGGATTTGTATCATCCTGTAGCCATGAAGAAAGGTGTTGATGTGATATTGGACCCTTGCAACGGATCTCTGTTCACACATTCCAAAGTAAAAGGTGATAGGGGAAAGCTTAGACAAATTCTATGCAATTTATTGAACAATGCCGTTAAATTTACTGATAAAGGGTACATAAAAGTTAGAGCATGGGCACAAAAACCTAGTCTCGAGACGAATGGAAACGATAATTTCAGGAAAAGTTTGATGGTGTTTTGGAAGAAGACTGATGCAAAAAAACATGACGTAGAAGCTATCCAATTATCTGTAAACGCCATGGAATATGTGTTTGAAGTGGACGATAGCGGCAAAGGAATACCTGAAGACAAGCGGCAGTCCGTGTTTGAGAACTACGTTCAAGTCAAAGAAACTGCAGTTGGTCGACAAGGGGGCACTGGCTTAGGTCTTGGCATTGTCAAATCTTTGGTACGCTTGATGCATGGCGACATTACCATTGTGGACAAGAATATGGGTGAGGAAGGAACTTGCTTCAGGTTCAATATCCTCTTAACTACAAGTACAATCAACGAAGGCAATGGGACTATTGGAGACGAAGGAAATCAATATAGTGGTTCTGGACAAACCATTCCCTCGACGTATGGCGATTCGAAACCTAGCCCAATAAGTCATAGACTGTCACTGTCCGGTCCAAGCCCCAAACCAGAGCGATCCCATGTTATCCTTCTCATTAAGGACCAAGAACGCATGACTACCTGCAGAAGGTTCATGGAGAATATGGGGATCATAGTGTGGTCTGTTGACACATGGGAGCAGTTGTCTTATTATCTCAAGAAGATAACCAAACGACTGAGTCATCGCTCACTTGCTGGTTCTTCTGACACGTCAAGATTTGATTCTCCAAACCAAGATTCAGTCAACTCTGACTCCCCAAACACAAAACCAGACTGTTTTCCTGATTCTATATTCAAGAAGAGCAATGCCCTGGCATCACTGTGTTGCGTTCTTCTTGTCATTGATTCAAATGCTGGACCTTTGGATGGACTTGCTCCAATTGTGGCCAAGTTCAGAAGAACCATTCCGAATCCTTTCAAGCTGGTTTGGTTGGAGGGAACCGCATACAACCGAAAGTCCAGTTCCGGATACTTAGACAAAGAGACTATGGATGCACAAGAAGACATTATCGTGTCGAAAGCATTTCATGGTAGAAAGCTGTACGAAGTCGCAGGAGTTCTTCCCGAGCTTGGAGGCTATCCGTGGGAGAAGAGGCCTCTCCAACCTGATAGAGCAATAAAAGAAAAGGCTTGGGAAGAAATGTTTAAACCAGACGACGATGATTTCTCGCCGATCGCAAAATACTGGACGGGCTTCCTTGGACCTGATCAGAACAATGATAACGCTCCTGTTGATAGAGACACAACCGGCAATCGTAAATTCTTGTCTGGGATGAAAATACTGGTCGTTGAGGATAGTGCACTGTTAGGAAGAATAGCCGTGGCTTTGCTACAAAAACTTGGTGCACTTGTTGAACAATGCACCAATGGTGAGGAAGCTGTGGAAAAAGTCCGACATGAACTAGAGAAGAATAAGATTGGGGGTTCTTTTGTTCTCCCCTACCATTATATCTTAATGGACTGCCAGATGCCTGTAATGGATGGTTATGAAGCCACTGGGCAGATAAGGGCGATGGAAAAGGAGTATGGTCTTCACATTCCTATTATTGCATTAACCGCTCATACTTTTGGATCCAATGCTGCAATTGAGGCACTGAACACTGGGATGGACTCTCATCTGAATAAACCCTTATCTGAGCAGAAATTGCGGGAAGCCATCGCAAGCATCCACGTGAAATGA 3381 0.4383 MICANNDRRSRRDNVCRRYDVNYHIEYSTLEGMICASNDRRSGRENAFAALIVLCGLTPKWYSMVKSIETHVNLDAQNFVSQLMSEVERSSELVQPFNLTPTNLSRFINSNLDLRSTTNIETQVAPMLFQASMALPFLTQITYIDTEDGRFFAYDLDVPQAIFNVVVPSSNYPNDPYQRLQTSYCGRSVNRDSGKLDDDAYPVSVTINETWFKNALNSPNGYTAVVGKWTSSDDLVFLSSARMEGRGMLCLGFAVDAIANFITAKIGSYGGKLYLATTDGTVLVQGLKDTQMMIVKGNEVSVQMMKSIDGDRQVSTRTVSCSNHDGASEPTILDIDNKEYMFYCSPIDTMGVQSVYALAFERNGLVSFVRSSKKAGLRLLTAMILLIIIFSAIFVFIIIRSIRIETHLSSSLTKQMEATEKAERKSTNKSIALAIATHDIRGSLAGLTGLIDSSRDQVALDSAVATNLKLMDTCVEDLHGLLNSILDTSKIEAGKMQLDEQEFDISQLLEDIVDLYHPVAMKKGVDVILDPCNGSLFTHSKVKGDRGKLRQILCNLLNNAVKFTDKGYIKVRAWAQKPSLETNGNDNFRKSLMVFWKKTDAKKHDVEAIQLSVNAMEYVFEVDDSGKGIPEDKRQSVFENYVQVKETAVGRQGGTGLGLGIVKSLVRLMHGDITIVDKNMGEEGTCFRFNILLTTSTINEGNGTIGDEGNQYSGSGQTIPSTYGDSKPSPISHRLSLSGPSPKPERSHVILLIKDQERMTTCRRFMENMGIIVWSVDTWEQLSYYLKKITKRLSHRSLAGSSDTSRFDSPNQDSVNSDSPNTKPDCFPDSIFKKSNALASLCCVLLVIDSNAGPLDGLAPIVAKFRRTIPNPFKLVWLEGTAYNRKSSSGYLDKETMDAQEDIIVSKAFHGRKLYEVAGVLPELGGYPWEKRPLQPDRAIKEKAWEEMFKPDDDDFSPIAKYWTGFLGPDQNNDNAPVDRDTTGNRKFLSGMKILVVEDSALLGRIAVALLQKLGALVEQCTNGEEAVEKVRHELEKNKIGGSFVLPYHYILMDCQMPVMDGYEATGQIRAMEKEYGLHIPIIALTAHTFGSNAAIEALNTGMDSHLNKPLSEQKLREAIASIHVK* 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01939 1126 CDD REC_hyHK_CKI1_RcsC-like 994 1120 - -
Pte18g01939 1126 SUPERFAMILY CheY-like 990 1123 IPR011006 -
Pte18g01939 1126 PANTHER TWO-COMPONENT HISTIDINE KINASE 210 1121 - -
Pte18g01939 1126 MobiDBLite consensus disorder prediction 702 736 - -
Pte18g01939 1126 SMART HKATPase_4 544 695 IPR003594 -
Pte18g01939 1126 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 544 694 IPR003594 -
Pte18g01939 1126 Gene3D - 971 1125 - -
Pte18g01939 1126 PRINTS Bacterial sensor protein C-terminal signature 618 632 IPR004358 GO:0016310|GO:0016772
Pte18g01939 1126 PRINTS Bacterial sensor protein C-terminal signature 653 671 IPR004358 GO:0016310|GO:0016772
Pte18g01939 1126 PRINTS Bacterial sensor protein C-terminal signature 636 646 IPR004358 GO:0016310|GO:0016772
Pte18g01939 1126 ProSiteProfiles Histidine kinase domain profile. 435 695 IPR005467 -
Pte18g01939 1126 MobiDBLite consensus disorder prediction 702 745 - -
Pte18g01939 1126 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 416 496 IPR036097 GO:0000155|GO:0007165
Pte18g01939 1126 SMART REC_2 992 1120 IPR001789 GO:0000160
Pte18g01939 1126 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 483 691 IPR036890 -
Pte18g01939 1126 Gene3D - 496 698 IPR036890 -
Pte18g01939 1126 Gene3D - 415 495 - -
Pte18g01939 1126 MobiDBLite consensus disorder prediction 799 822 - -
Pte18g01939 1126 ProSiteProfiles Response regulatory domain profile. 993 1124 IPR001789 GO:0000160
Pte18g01939 1126 SMART HisKA_10 428 494 IPR003661 GO:0000155|GO:0007165
Pte18g01939 1126 Pfam Response regulator receiver domain 994 1120 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01939 Pte-Chr18 30056579 30063591 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01939 47 1113 Histidine Kinase Gene Family AT2G47430 37.213 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pte18g01939 HATPase_c 1e-24 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01939 - - qsa:O6P43_007242 835.484