Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01928 ATGTCTAAGAGAAAGTTCGGGTTTGAAGGTTTCGGTCTAAACCGGCAAGCAACTTATAATTTTGAGCGATCTCAAGCTCCTCAACGACTTTATGTACCTCCATCTTCGCGTTCTCAGGCCCACGATAATTACGAGGATACTGATTTGGACAGCATTGAGTACGATGATAATGATAATGGCAAGGAAGTCACCAACCAGATTGACTGTGACGACGGTGAAATTGACCCATTGGATGCTTTCATGGAAGGTATTCACGAGGAAATGAGGGCTGCTCCACCACCTAAACCGAAGGGTAGGGTTGAAGATAAGTATAAGGACGACGAAGAGGATGATCCCATGGAGAGTTATTTGAAGGCAAAGAAAGACGTCGGTCTCACATTGGCGTCTGAGGCTCTTCGTGCCGGGTATGATTCTGATGAGGAAGTTTATGCTGCTGCTAAGGCCGTGGATGCTGGAATGGTGGAGTATGATTCAGATGATAATCCGATTGTCACGGATAAGAAAAAGATTGAGCCTATTCCAGCTTTGGATCATAGTACAATTGAGTACGAGCCTTTCAATAAGGACTTTTACGAGGAGAACCCTTCAATATCAGGGATGAGCGAGCAGGACATTACTGAATATCGGAAGGGTCTGGCTATTCGTGTATCAGGGTTTGATATTCCTAGACCAATTAATACTTTTGATGACTGTGGTTTCTCTCCGCAGCTTATGAGTGCCATAAAAAAACAAGGGTACGAGAAGCCCACTTCAATACAGTGTCAAGCTCTACCAATTGTGCTTTCTGGTAGAGATGTTATTGGTATCGCAAAAACTGGCTCTGGTAAAACTGCTGCTTTTGTGCTGCCCATGATTGTACATATTATGGATCAGCCTGAACTTGAGAAAGAAGAGGGTCCTATTGGTGTGGTATGTGCGCCAACAAGAGAACTGGCCCATCAAATATACTTGGAAGCCAAGAAATTTGCCAAACCACATAGTCTTCGCGTTTCTGCTGTCTATGGTGGGATGTCCAAACTAGAGCAGTTCAAAGAACTCAAGGCAGGCTGTGAGATAGTGGTTGCTACGCCAGGGAGATTGATTGACATGCTGAAGATGAAGGCACTTACGATGTCAAGAGCAACGTATTTGATACTTGATGAAGCTGATAGGATGTTTGACCTAGGATTTGAGCCACAAATTAGGTCTATTGTCGGTCAGATAAGGCCAGATCGCCAAACTTTACTGTTTTCTGCAACCATGCCACGTAAAGTTGAAAAGCTTGCAAGGGAAATCCTTACAGATCCTATTAGAGTTACAGTGGGGGAGGTGGGAATGGCAAATGAGGACATCACTCAAATTGTTCAAGTGATTCCTTCTGATGCAGAGAAAATGCCATGGCTTCTTGGAAAATTGCCTGAAATAATTGATGAGGGTGATGTTCTAGTGTTTGCTTCCAAAAAGGCTACAGTTGATGAAATAGAATCTCAGTTGTCTCAGAGGAGCTTTAAAGTTGCAGCTCTTCATGGTGATAAAGACCAAGCTTCTCGGATGGATATTTTGCAAAAATTCAAATCTGGCATATACCATGTGCTCATTGCAACTGATGTTGCTGCACGAGGTCTTGATATCAAGTCAATAAAGTCAGTGGTGAACTTTGACATTGCAAAAGACATGGACATGCATGTGCATCGCATCGGTAGAACAGGCCGTGCTGGTGATAAAGATGGGGTTGCTTACACTCTGATAACTCAGAAAGAAGCAAGATTTGCTGGTGAATTGGTCAATAGCTTAATTGCTGCTGGTCAGAATGTTCCAGTGGAATTGATGGATCTTGCCATGAAGGATGGGAGATTCAGGTCCAAACGTGATGCTAGAAAAGGAGGTGGAAAGAAAGGTAAAGGGAGGGGTAGTGGTGGTCGTGGAGTGCGTGGAGTGGATTTTGGCTTGGGTATTGGATATAACCCAGAATCAAACAATCCATCCAGTGGCGGTCGGTCGGCTGCTGTCAATTCCCTAAGAACGGGAATGATGGCACAATTCAAAAGCAACTTTGTCGCTGCTGCTTCAAATTCTCAGAATCAAGGTTTCAGTAATAGTTGTAGCATGGCAGCTAGCAAAAAACCTGCTCTTGCGGGATTTGTATCCGGTGGATCCATTGGCGGGGACATAAATAAAGCACATACAAATACCACATTCACACCTGCAACTTCTGTGGTGAATGCCTCCTCTCAGAACCATAGAGATAGTTCTAGCCAGAAGAATATAGAAAGTTCTAGACCTAGAGAAAAAAGGCGGAGGCCTTCCGGTTGGGATCGATAG 2301 0.4407 MSKRKFGFEGFGLNRQATYNFERSQAPQRLYVPPSSRSQAHDNYEDTDLDSIEYDDNDNGKEVTNQIDCDDGEIDPLDAFMEGIHEEMRAAPPPKPKGRVEDKYKDDEEDDPMESYLKAKKDVGLTLASEALRAGYDSDEEVYAAAKAVDAGMVEYDSDDNPIVTDKKKIEPIPALDHSTIEYEPFNKDFYEENPSISGMSEQDITEYRKGLAIRVSGFDIPRPINTFDDCGFSPQLMSAIKKQGYEKPTSIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPHSLRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMSRATYLILDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPIRVTVGEVGMANEDITQIVQVIPSDAEKMPWLLGKLPEIIDEGDVLVFASKKATVDEIESQLSQRSFKVAALHGDKDQASRMDILQKFKSGIYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLIAAGQNVPVELMDLAMKDGRFRSKRDARKGGGKKGKGRGSGGRGVRGVDFGLGIGYNPESNNPSSGGRSAAVNSLRTGMMAQFKSNFVAAASNSQNQGFSNSCSMAASKKPALAGFVSGGSIGGDINKAHTNTTFTPATSVVNASSQNHRDSSSQKNIESSRPREKRRRPSGWDR* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01928 766 CDD SF2_C_DEAD 444 576 - -
Pte18g01928 766 MobiDBLite consensus disorder prediction 613 637 - -
Pte18g01928 766 MobiDBLite consensus disorder prediction 728 766 - -
Pte18g01928 766 MobiDBLite consensus disorder prediction 87 112 - -
Pte18g01928 766 Pfam DEAD/DEAH box helicase 250 421 IPR011545 GO:0003676|GO:0005524
Pte18g01928 766 Gene3D - 434 610 IPR027417 -
Pte18g01928 766 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 226 254 IPR014014 GO:0003724
Pte18g01928 766 FunFam probable ATP-dependent RNA helicase DDX17 188 435 - -
Pte18g01928 766 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 443 606 IPR001650 -
Pte18g01928 766 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 378 386 IPR000629 -
Pte18g01928 766 Pfam Helicase conserved C-terminal domain 470 566 IPR001650 -
Pte18g01928 766 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 257 432 IPR014001 -
Pte18g01928 766 SMART ultradead3 245 447 IPR014001 -
Pte18g01928 766 MobiDBLite consensus disorder prediction 17 62 - -
Pte18g01928 766 Gene3D - 189 433 IPR027417 -
Pte18g01928 766 MobiDBLite consensus disorder prediction 17 40 - -
Pte18g01928 766 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 192 606 - -
Pte18g01928 766 MobiDBLite consensus disorder prediction 728 745 - -
Pte18g01928 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 435 IPR027417 -
Pte18g01928 766 CDD DEADc_DDX42 237 433 - -
Pte18g01928 766 MobiDBLite consensus disorder prediction 746 766 - -
Pte18g01928 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 604 IPR027417 -
Pte18g01928 766 MobiDBLite consensus disorder prediction 617 631 - -
Pte18g01928 766 SMART helicmild6 485 566 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01928 Pte-Chr18 29983426 29987855 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01928 224 605 Eukaryotic Initiation Factors Gene Family AT3G19760 31.688 4.26e-64 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01928 K12835 - gmx:100814854 1227.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01928 18 29983426 29987855 Pte18g01928 18 29983426 29987855 RCT