Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01920 ATGAATGGTTGTGAGATCAGAGATTCTTCCGCCAATGGGGCATTCCATCCAAATAATAGTGATTATGGACATGCTCCTTTAAGGAAACGGTGCTGGCATCAATCTCGTGGTCGTGGCTCTCCTCCAGATCACAGTGGCGGTGCATGCCATGTAAAACTTTACGTTTCACCGGTACCAAGAACTGTAACTGAAGCTGAAATTCGATGTCTGTTTGATGGGCATGGGACTATAGCTGAAGTTGTACTATTGAAGGACAGAAAACATGGTGGACAACAAGGCAGTTGTTTTGTGAAATATACAAATTTGGAAGGAGCTGATAGGGCTATAAGAGCTTTATGCAATCAGTACACGTTTCATGGGGAACCATGTCCTATTACTGTGAAATATGCTGATGGAGAGATCGAACGTCTTGGGATAATTGACAAGGTGTTCGTGAATGGCTTCCACAGAGAAGCTTCAAGAAAGCAAATTGAGGAAATATTTTCTGCTTATGGCCACGTTGAAGAAGTCTTCATTTGTCGCAATGAGCTGAAGCAAAGTCGTGGTTATGGATTTGTCCAGTTTACTCACAGAGAAATGGCACTGGCAGCAATTGATGGGTTACATGAAAAGTTCACAATGCCTGGTTGCAGTCAGCCATTCATTGTTCGTTTTGCAAGTCCAAAGAAACCCAAGACTGGAGATCTGAGACAAGCACCCATATACAGTGATCCGAAAGGGGGAGTCATGGCTCCGAATCATTTTACAGTATTGCAACCACACGTGCCCATTCATTTGGAAAACTCACCATCTAGTACTGGTATGATGCAACAAACATTTCAACCGAAACACTCACTTCCACAGTGGCCTCCAGTGCCATTGCAACCCATGCAAATGCAGCATTTGGGTTCTCAACCTGCAGCTGAACTGAGACAGTCAAATCAAATATATACAAATGCCCAAAATATGGACCAACTTAAGTGTTCACAGATGGCAAGCAGTCCTCCGACTGGTGTTATACAAGATGTAATTGTTACTTCCCAGGATGGACTTTCCCCTGAGTGTGACTGGAGTGAGCACACCTGTCCTGACGGTTATAAATACTATTACAATTGTACTGCATGTGAAAGCAGGTGGGAAAAGCCGGAAGAGTATGTCTCCTATGAGCAGCAAATTAGAAAGCAGCAGCATGTGCTGAATCTTCATCATCAGCTTCAGTCACCACTGTCACTTCTTTCCCCTGAAAAATGTACTCAAACACAAAAGGAACCAGAGTGTGTTCAATTGCAGCCAGAAACAAGCTCTGTTATTGGTCCTACCTGTTCTCGAAGTTAG 1314 0.4361 MNGCEIRDSSANGAFHPNNSDYGHAPLRKRCWHQSRGRGSPPDHSGGACHVKLYVSPVPRTVTEAEIRCLFDGHGTIAEVVLLKDRKHGGQQGSCFVKYTNLEGADRAIRALCNQYTFHGEPCPITVKYADGEIERLGIIDKVFVNGFHREASRKQIEEIFSAYGHVEEVFICRNELKQSRGYGFVQFTHREMALAAIDGLHEKFTMPGCSQPFIVRFASPKKPKTGDLRQAPIYSDPKGGVMAPNHFTVLQPHVPIHLENSPSSTGMMQQTFQPKHSLPQWPPVPLQPMQMQHLGSQPAAELRQSNQIYTNAQNMDQLKCSQMASSPPTGVIQDVIVTSQDGLSPECDWSEHTCPDGYKYYYNCTACESRWEKPEEYVSYEQQIRKQQHVLNLHHQLQSPLSLLSPEKCTQTQKEPECVQLQPETSSVIGPTCSRS* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01920 437 CDD WW 348 377 IPR001202 GO:0005515
Pte18g01920 437 Pfam WW domain 348 375 IPR001202 GO:0005515
Pte18g01920 437 PANTHER RNA BINDING PROTEIN 11 396 - -
Pte18g01920 437 Gene3D - 140 227 IPR012677 -
Pte18g01920 437 SUPERFAMILY RNA-binding domain, RBD 34 135 IPR035979 GO:0003676
Pte18g01920 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 221 IPR000504 GO:0003723
Pte18g01920 437 ProSitePatterns WW/rsp5/WWP domain signature. 350 375 IPR001202 GO:0005515
Pte18g01920 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 132 IPR000504 GO:0003723
Pte18g01920 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 120 IPR000504 GO:0003723
Pte18g01920 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 205 IPR000504 GO:0003723
Pte18g01920 437 SMART rrm1_1 52 126 IPR000504 GO:0003723
Pte18g01920 437 SMART rrm1_1 142 217 IPR000504 GO:0003723
Pte18g01920 437 Gene3D - 338 393 - -
Pte18g01920 437 ProSiteProfiles WW/rsp5/WWP domain profile. 350 377 IPR001202 GO:0005515
Pte18g01920 437 SUPERFAMILY WW domain 349 383 IPR036020 GO:0005515
Pte18g01920 437 SUPERFAMILY RNA-binding domain, RBD 142 228 IPR035979 GO:0003676
Pte18g01920 437 SMART ww_5 345 377 IPR001202 GO:0005515
Pte18g01920 437 Gene3D - 48 136 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01920 53 286 Eukaryotic Initiation Factors Gene Family AT4G34110 24.900 1.67e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01920 K13207 - cave:132169172 376.711