Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01915 ATGGCAGATGTTATATTGTTTGTAGAAAATTTTAAATCGAATTCTTCGATTTCCCTGTGTAGAATATGCCATGAAGAAGAAATCGAAAACTCCTGTAGCTTGGAAGCTCCATGTGCTTGCTCGGGAACGGTTAAGTTCGCACACAGAGATTGCATACAGAGGTGGTGTGACGAGAAGGGAAATACAACCTGTGAATTATGTCTTCAGCAATACGAGCCAGGGTACACGGCACCTCCCAAGAAGTCTCCTCTAAACGAAGTAGCAGTGACAATTAGAGATAGACAGCAGATCCCAAGGGAGAATGAAGCACTGAACCCAAGAATAGAAGTTACTATAGCTGAGGGATTTGCAATTCAAAGAGATGATTCACAATGCCGTTCTGTGGCAGATGGAAGCGAGTCTTTCTGTCGATCGCTGGCTCTAACCTTTACGGTCATTCTGCTCGTCAGAGATTTCTTTGCTGTAGTTAACAGGGGAACGGAAGAATATCCTTTCACTCTTCTTATCGTAAGTAAATTTTATTCAGACCAATAG 534 0.4251 MADVILFVENFKSNSSISLCRICHEEEIENSCSLEAPCACSGTVKFAHRDCIQRWCDEKGNTTCELCLQQYEPGYTAPPKKSPLNEVAVTIRDRQQIPRENEALNPRIEVTIAEGFAIQRDDSQCRSVADGSESFCRSLALTFTVILLVRDFFAVVNRGTEEYPFTLLIVSKFYSDQ* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01915 177 SMART ringv_2 19 68 IPR011016 GO:0008270
Pte18g01915 177 SUPERFAMILY RING/U-box 16 72 - -
Pte18g01915 177 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 13 170 IPR033275 -
Pte18g01915 177 Pfam Protein of unknown function (DUF3675) 73 170 IPR022143 -
Pte18g01915 177 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Pte18g01915 177 CDD RING_CH-C4HC3_MARCH 20 67 - -
Pte18g01915 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 77 IPR013083 -
Pte18g01915 177 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Pte18g01915 177 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01915 Pte-Chr18 29892106 29894648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01915 20 114 C3H Transcription Factor Family AT2G37950 29.897 1.12e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01915 - - zju:107426148 239.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01915 18 29892106 29894648 Pte18g01915 18 29892106 29894648 RCT