Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte18g01910 | ATGAGCACAGCATGCCCGTGCGGGCGTAGCTCAGTTGGTACTCGGGCAGCAGATTGCACCTTAAGAATGCAGGTTCGAACAAAGCTTGTGAGTGGCGGTGGAGTTGATGTCGGTAAATACTCCCCGAATTGCACTCATGTCATTGTTGATAAAATTGTTTATGATGATGAGGTGTGCGTTGCGGCTAGGGAAGATGGAAAGAAAGTTGTGACTGCTTTGTGGGTCGATCATAGTTTTGACGTTGAAATGCAGCTCGATCCCAATTCCATAATGTACAGACCTCCTCGAGCTTTGAATGGAATACCTGGCGCAAAAAATTTAGTCTTCTGTTTAACTGGATATCAACGCCAGGATCGGGAGGACATAATGACAATGGTAGGCTTGGTGGGAGCACAATTTAGTAAGCCATTGGTTGCAAACAAGGTTACTCATCTCGTATGCTACAAATTTGAAGGGGAGAAGTTTGAACTTGCGAAGAAAATGAGGAAGATAAAGCTTATCAATCATCGGTGGTTGGAGGATTGCTTGCGGGATTGGACACTTCTTCCTGAAGAAAACTATAGCAAGAGTGCCTACGAGCTGGAGATGTTGGAGGCTGAGGCCAAGGATTCAGAAGACGAGGTTGAAAAGCCCTCAGTACAGTCTTCAGGGGGAAGAACTTCGACTATGAATCCCAGTAACTTCAATACAGGAATTTCAATTTCAGATAATGTAAATAAGGACATAGGAGCTGTTCACACAGCAGTTGCAGTGGCCAAGACCCCCGAGCCTCGGCATGAAATCTTAAAGAAATTTGGTTGTGAGGATATGGGTGTATCTGTCGCTGCTACATCTGGTAATGTATCGGGTGTGCTCGTTGTCACTACTGGATCTGGGAAGAAAGGAAACAGCGCGATAGCAACTTCTGGATGTGCTGGTGAGAAGAATAAATTGGATTCGAAGTTTAATTCTATGAGTTACTCTAGGAAGACTTCAAGCAGATTCACACTTCCAAGGTGTTCAGAGGAGAGAACAGGAAACGAAAGTGGCCCTTTGAAGATACCTTCCAGTAAAACATGTAATGATGACCTCGAAACAGTGCGCCACGCCATGGAAATGGTACAGGGTCAGAAAGAAGAATCTGGTTGTGTTGATGGATTTGGGAAAGTAGCTGATGGGATTTTTGAGGAGACAACTAGTATATTGCCCCAAAAGGAGACGGGAGAAGTTTCTCATGCTTATTTTAAACCCGCGAAGCCAAGTCCCAATGAAAGGAGTAGCGGAAAATTCCCTAGTTCATATGTTAAAACTCCTGCATCAACATCACGTGGAGCTGATACTAAGAGGAGATTATCTGTGGGCAACAGCAGTTGTACTTTGGACGAAAAGGCCCAGCTAAGTTTTGCAAAAGACTCCGGCACTCTGTTTGCAATCCCCGGGCATGTACATTCTTCCCCGAATTCAAAAAAACTACTTTTCCCAAACGCTGTAACCTCAGAGGCACTGGCTGTTGGTAAACAAGCAGAGCCACAGAAGCCCGTTCTTAATGAAAAGGATAGTGAAGTAAGCAAAACTTCAAATGGTAAAACTCAAGGGCTTTTGCAAAACTCTTATCGAGCTGAGACTTTTAGGATAAACAGCGATTTCTCTTCGGGTGAAAAATCCAAACTAATTATTGCAAAGGACTCTAGCACTATGTCTGCACCGAAAGCAACTGCTCTTTTAGCTTTAAAGGCACAAGAGCGACTTGTTTCAAATGGTGTAACTTCAGAGGCTTTGCAATCTGATAATGTGTTAATAACACCTCAGGCATCTCTTCAGATACGGAGTGAGTCTGATATTGATGGCAAGAGGAAGATTGCAGACATTAGCACACAGAAAATTGATAACAGACCGGAGCCACAGAATTGGAATCACGATGCTCAGTGTTTTAGTAATGAAATGCCTGCGTTAAACGGTTTCGGTGAGGTTGCTTCTAATTTAAGTACAGAACGAAATGGTAAAGCAGTCGTCAAAAGGACTGGCAAGAAGTCAGTCACCAAGAAAACTTTAGGTTCTAGACGCACGTTGAGTGCTAAAGGGGACCAGAAAAGTTCTGTTTACTTGCACAAAATTACATCAGTAGATGCAGCTGCTGCAAGTCATCTGGATAAATGTGAAGTGCCACTAGATATAGACAAACCTTATGGTTTTGACGAACTTCTCTCATCTCCCCAAAGAAATGATGTTGAACTAGCGCCGCGAAGTTTTAATGAAATTGGGGAGAATGAGAAAGCAAGTGAAACAATGGATGATGAAACGGAAGGTCCAGAGGGCAGGGTTGAATTTGAGTTGGAGAAAGAGGATGTTAAGAAGACAGAGGCGGTTCTGTTGTCGAAAACATCAGACTCAGTGGCAGATGGCAAACTGTTTTGCGATGTGAAGTCTGGTAAATCTATACATGAAGAGGAGGATAAAAATGGAACTGATGTGGTAATGTCAGACGTGGTAGTGCACAGCATTAACAGCCATGATGAGCCATTGGTCTTCGAAGAACCAATGCCTATGGCTGCGCGACAAGAGGCAATTTGTGGGACAAATAGAGAGCAGTTAGACTCTTGTGTAGGAGAAGCTCCGGCAAGCAAAAAAGGAAACAAAGGGAGAAAACGTCCACTTGCTAAAACTAAGACGAAGACCGCTCCAATTGCAGCGGGCTCACTGAAATCTAAAGAAACATCAGAGAAGGCAGATTCTAAGGGTGGCACGAAAGATAAGTCAGAGGTTGAAAAATGGAATCCTGAAGGTAAGAGTGACAGTCAAGCCATGCCGATAAATAATCTAGAGAACTCTACTGAGCGGGAAAAGGAGAACCAGCCAGTTAACGACAGAAATAAAAAAAAATATCAGAGAAAATCTTCTGTTACGAAGCGGGGTGTCAATTCTACCTCGTTGCTAACTAAAAATGATATAGAACACAGGAATAGTGGTGGTCTGACTGCATCTATTACAGCGGAAGTTGAGAGAATGAAATCTGAACCCATGTGTTTCATATTAAGCGGACACCGGTTGCAAAGAAAGGAGTTTCAACAAGTTATTAGGCGTTTAAAAGGAAGATGTTGCCGTGATTCACACCAGTGGTCCTACCAAGCAACCCACTTCATATCCCCAGATCCACTACGAAGGACAGAGAAGTTGTTTGCGGCTGCTGCGTCTGGAAGGTGGATTCTTAAAACTGATTTCTTAACAACTAGTAGTCAGGCGGGGAAATTTTTGGCAGAGGAGCCCTATGAGTGGCACTGCAAGGGCCTTAGCGAAGATGGTGCAATAAATATGGAGGCTCCACGGAAATGGCGAATTTTAAGGCAGAGAACAGGTCATGGTGCCTTACACGGCATGCGCGTGATAATTTATGGCGATTGCATTGCCCCTCCGCTGGATACATTAAAGCGTGTTATTAAGGCGGGAGGTGGAACAATATTAGCAACATCGCCTCCTTATAGTCGTTTCCTTGCAACCGGAGTTGATTATGCTATTGTCAGTCCAGGCATGCCCCGCGTAGATTTATGGGTCCAACAGTTCTTAAAACACGAGATACCCTGCGTTGTAGCTGATTACTTAGTTGAGTATGTATGCAAGCCTGGTTTTTCACTTGAAAGACATGTACTCTATGGTACTCATACTTGGGCAGAGAGATCGTACACTGTGATGCAGAAGCGAGCTGAGGAACTTGATGATGACCTGAAGTCTCCAAATGACCGTGATAACGGTGACATTCACTGCCAAGTTTGCGGATCCCGTGACAGAGGAGATGTGATGCTGATTTGTGGGGATGAAAGTGGTACTGTTGGTTGTGGTATTGGCACACACATTGAGTGCTGTGATCCTCCATTAGAGGATGTACCGGTGGAAGATTGGTTTTGTGCTATGTGCAGTAAAACCAAAAACTGCTCAAATCCTTCTGTGAAAAAGAGAAAAGGGGTCTTCTCGTCTCCAACGAAGCGCAGGCCATGA | 3969 | 0.4414 | MSTACPCGRSSVGTRAADCTLRMQVRTKLVSGGGVDVGKYSPNCTHVIVDKIVYDDEVCVAAREDGKKVVTALWVDHSFDVEMQLDPNSIMYRPPRALNGIPGAKNLVFCLTGYQRQDREDIMTMVGLVGAQFSKPLVANKVTHLVCYKFEGEKFELAKKMRKIKLINHRWLEDCLRDWTLLPEENYSKSAYELEMLEAEAKDSEDEVEKPSVQSSGGRTSTMNPSNFNTGISISDNVNKDIGAVHTAVAVAKTPEPRHEILKKFGCEDMGVSVAATSGNVSGVLVVTTGSGKKGNSAIATSGCAGEKNKLDSKFNSMSYSRKTSSRFTLPRCSEERTGNESGPLKIPSSKTCNDDLETVRHAMEMVQGQKEESGCVDGFGKVADGIFEETTSILPQKETGEVSHAYFKPAKPSPNERSSGKFPSSYVKTPASTSRGADTKRRLSVGNSSCTLDEKAQLSFAKDSGTLFAIPGHVHSSPNSKKLLFPNAVTSEALAVGKQAEPQKPVLNEKDSEVSKTSNGKTQGLLQNSYRAETFRINSDFSSGEKSKLIIAKDSSTMSAPKATALLALKAQERLVSNGVTSEALQSDNVLITPQASLQIRSESDIDGKRKIADISTQKIDNRPEPQNWNHDAQCFSNEMPALNGFGEVASNLSTERNGKAVVKRTGKKSVTKKTLGSRRTLSAKGDQKSSVYLHKITSVDAAAASHLDKCEVPLDIDKPYGFDELLSSPQRNDVELAPRSFNEIGENEKASETMDDETEGPEGRVEFELEKEDVKKTEAVLLSKTSDSVADGKLFCDVKSGKSIHEEEDKNGTDVVMSDVVVHSINSHDEPLVFEEPMPMAARQEAICGTNREQLDSCVGEAPASKKGNKGRKRPLAKTKTKTAPIAAGSLKSKETSEKADSKGGTKDKSEVEKWNPEGKSDSQAMPINNLENSTEREKENQPVNDRNKKKYQRKSSVTKRGVNSTSLLTKNDIEHRNSGGLTASITAEVERMKSEPMCFILSGHRLQRKEFQQVIRRLKGRCCRDSHQWSYQATHFISPDPLRRTEKLFAAAASGRWILKTDFLTTSSQAGKFLAEEPYEWHCKGLSEDGAINMEAPRKWRILRQRTGHGALHGMRVIIYGDCIAPPLDTLKRVIKAGGGTILATSPPYSRFLATGVDYAIVSPGMPRVDLWVQQFLKHEIPCVVADYLVEYVCKPGFSLERHVLYGTHTWAERSYTVMQKRAEELDDDLKSPNDRDNGDIHCQVCGSRDRGDVMLICGDESGTVGCGIGTHIECCDPPLEDVPVEDWFCAMCSKTKNCSNPSVKKRKGVFSSPTKRRP* | 1323 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte18g01910 | 1322 | SUPERFAMILY | BRCT domain | 105 | 188 | IPR036420 | - | |
| Pte18g01910 | 1322 | CDD | BRCT_TopBP1_rpt7 | 999 | 1074 | - | - | |
| Pte18g01910 | 1322 | MobiDBLite | consensus disorder prediction | 407 | 443 | - | - | |
| Pte18g01910 | 1322 | SUPERFAMILY | FYVE/PHD zinc finger | 1233 | 1302 | IPR011011 | - | |
| Pte18g01910 | 1322 | MobiDBLite | consensus disorder prediction | 1303 | 1322 | - | - | |
| Pte18g01910 | 1322 | SMART | PHD_3 | 1245 | 1297 | IPR001965 | - | |
| Pte18g01910 | 1322 | MobiDBLite | consensus disorder prediction | 418 | 443 | - | - | |
| Pte18g01910 | 1322 | Gene3D | BRCT domain | 1112 | 1208 | IPR036420 | - | |
| Pte18g01910 | 1322 | ProSiteProfiles | BRCT domain profile. | 105 | 189 | IPR001357 | - | |
| Pte18g01910 | 1322 | ProSiteProfiles | Zinc finger PHD-type profile. | 1243 | 1299 | IPR019787 | - | |
| Pte18g01910 | 1322 | MobiDBLite | consensus disorder prediction | 213 | 228 | - | - | |
| Pte18g01910 | 1322 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1209 | 1311 | IPR013083 | - | |
| Pte18g01910 | 1322 | MobiDBLite | consensus disorder prediction | 935 | 954 | - | - | |
| Pte18g01910 | 1322 | MobiDBLite | consensus disorder prediction | 200 | 228 | - | - | |
| Pte18g01910 | 1322 | Coils | Coil | 187 | 207 | - | - | |
| Pte18g01910 | 1322 | SMART | BRCT_7 | 5 | 82 | IPR001357 | - | |
| Pte18g01910 | 1322 | SMART | BRCT_7 | 102 | 179 | IPR001357 | - | |
| Pte18g01910 | 1322 | SMART | BRCT_7 | 1112 | 1199 | IPR001357 | - | |
| Pte18g01910 | 1322 | SMART | BRCT_7 | 994 | 1074 | IPR001357 | - | |
| Pte18g01910 | 1322 | MobiDBLite | consensus disorder prediction | 861 | 974 | - | - | |
| Pte18g01910 | 1322 | Pfam | BRCA1 C Terminus (BRCT) domain | 1005 | 1068 | IPR001357 | - | |
| Pte18g01910 | 1322 | PANTHER | BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED | 846 | 1310 | IPR044254 | - | |
| Pte18g01910 | 1322 | MobiDBLite | consensus disorder prediction | 960 | 974 | - | - | |
| Pte18g01910 | 1322 | SUPERFAMILY | BRCT domain | 23 | 88 | IPR036420 | - | |
| Pte18g01910 | 1322 | Gene3D | BRCT domain | 11 | 91 | IPR036420 | - | |
| Pte18g01910 | 1322 | Gene3D | BRCT domain | 993 | 1111 | IPR036420 | - | |
| Pte18g01910 | 1322 | MobiDBLite | consensus disorder prediction | 332 | 352 | - | - | |
| Pte18g01910 | 1322 | MobiDBLite | consensus disorder prediction | 497 | 528 | - | - | |
| Pte18g01910 | 1322 | Pfam | twin BRCT domain | 107 | 171 | IPR001357 | - | |
| Pte18g01910 | 1322 | MobiDBLite | consensus disorder prediction | 896 | 920 | - | - | |
| Pte18g01910 | 1322 | Gene3D | BRCT domain | 98 | 218 | IPR036420 | - | |
| Pte18g01910 | 1322 | SUPERFAMILY | BRCT domain | 1000 | 1085 | IPR036420 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte18g01910 | Pte-Chr18 | 29853499 | 29861468 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte18g01910 | 125 | 327 | Core DNA Replication Machinery Family | AT4G02110 | 40.845 | 2.98e-37 | 151 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte18g01910 | K10728 | - | qsa:O6P43_007236 | 1055.82 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pte18g01910 | 18 | 29853499 | 29861468 | Pte18g01910 | 18 | 29853499 | 29861468 | RCT |