Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01907 ATGGGAAGAGCACCTTGCTGTGAGAAAGTAGGATTGAAGAAGGGAAGGTGGAGTACAGAGGAGGACGAGATATTGATCAACTACATTCGTGCCAATGGAGAAGGGTCTTGGAGGTCTTTACCAAAGAATGCGGGATTGCTCAGGTGTGGTAAGAGTTGCAGGCTTAGATGGATCAACTATTTGAGAAGTGACCTGAAGAGAGGGAACATTACGACTGAAGAAGAAGATATGATAATTGAGATGCATGCGTCATTGGGTAACAGGTGGTCATTGATAGCAAGTCACTTGCCAGGAAGAACAGACAACGAGATTAAAAACTACTGGAATTCTCACTTGAGTAGAAAGATTGACACCTTCAGGCCAAGGCCTAGGCCAATCTCCTGCACTCAGGCAAAAGCTGAAGGAGGTAGAACTAGCCGTTGGCCCACGAAGCACAAATGTCCGGCCTCTGAAAAAAATATCAGACCATCAGATATTGGAAAAAATAATTCAAGCCCAGAAGAAGCAGCAATCCTATTGCCGCAAACCCCTGAGATGGAAAGTGAAAGCTTGCCGAGCTTGAAGATGAAAAATAGCATTGCTTTGGATTTAGAAGCAGCTGATCATGACATACCCAACAATGAAAAGACAAATTCGGGTGATCATGATCAGGACATTGAATTGAAAGAGACCCCTCTGAGCTCTAGTGAAGTAGGAGTAGCAGAGAGTCTGAAAGGAACAAGCTCTCGCAAAGGTCTGCGAGAGAAACGTGACAGTGCAATGTTGTCCCCGAATGGAAACGAAATTACGATTTGTACTGTTGCAGGACCATGCACTAGTGACGAGAGCAGTAATATTGATGAGGGTGGGGCGTTATGTTTTGATGACATACTGGGGTGCAACGTGCAGGATTTAGGTGATGTATTGAATGAAACCCATGATGTCGTCATGTGTTTTAATCAGACTGGGTTTATGTGTCTAAACGAAATGGACATGGAGAATGCAAATCTCAGTTCAAACGGAGAGGTGAGCACAGACTGCTTTCCTGGCTCTTCCATGTCTTTGGCTTTTGTTGATGATAATATCGACAACAACAATTGGAACAGCGATGATCAATCGTGGGATGGACAAAAATCCATGTTGTCTTGGTTGTGGGACGGAGAAATTTGCGAGGGTGACTTTCGTGGAAAACAAACCTTGGATCCTGACCAAGTAAATCTGAAACAATGA 1209 0.4409 MGRAPCCEKVGLKKGRWSTEEDEILINYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDLKRGNITTEEEDMIIEMHASLGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIDTFRPRPRPISCTQAKAEGGRTSRWPTKHKCPASEKNIRPSDIGKNNSSPEEAAILLPQTPEMESESLPSLKMKNSIALDLEAADHDIPNNEKTNSGDHDQDIELKETPLSSSEVGVAESLKGTSSRKGLREKRDSAMLSPNGNEITICTVAGPCTSDESSNIDEGGALCFDDILGCNVQDLGDVLNETHDVVMCFNQTGFMCLNEMDMENANLSSNGEVSTDCFPGSSMSLAFVDDNIDNNNWNSDDQSWDGQKSMLSWLWDGEICEGDFRGKQTLDPDQVNLKQ* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01907 402 Gene3D - 71 116 - -
Pte18g01907 402 MobiDBLite consensus disorder prediction 138 152 - -
Pte18g01907 402 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte18g01907 402 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 202 - -
Pte18g01907 402 CDD SANT 16 61 IPR001005 -
Pte18g01907 402 FunFam Myb transcription factor 71 116 - -
Pte18g01907 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte18g01907 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte18g01907 402 MobiDBLite consensus disorder prediction 224 255 - -
Pte18g01907 402 MobiDBLite consensus disorder prediction 121 165 - -
Pte18g01907 402 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte18g01907 402 SMART sant 66 114 IPR001005 -
Pte18g01907 402 SMART sant 13 63 IPR001005 -
Pte18g01907 402 CDD SANT 71 112 IPR001005 -
Pte18g01907 402 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte18g01907 402 Gene3D - 11 67 - -
Pte18g01907 402 FunFam Myb transcription factor 11 67 - -
Pte18g01907 402 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pte18g01907 402 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01907 Pte-Chr18 29839775 29842363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01907 1 146 MYB Transcription Factor Family AT2G47460 67.702 3.26e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte18g01907 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01907 K09422 - tcc:18613668 282.337