Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01903 ATGGTTAAAACAAATGCAAAGGACAAGAATTCCATTTCCAATAAACACCCTCCTTATTTTGAGATGATAGCCGAAGCAATACTGGCATTGAAAGAACGTAATGGGTCAAGCCAGCCAGCCATAGCCAAGTTCATCGAGGATAAGTACAAAAAAGTCCTTCCCTCCGATTTCAGGAAGTTCTTGTCAGTTCAGTTGAGGAAGTTTGTGAATTCTGATAAACTGGTCAAGGTCAAGAACTCCTATAAGATCTCTTGCGCTGAGAAGTTGAAGATAGCCATAAAGGGTTCGACTCAGACTGCTCCGCCAACAACTAAGGCTGTGCCTTCCAAGGTCAAGGCTAACGAGAAAATCACACAAAGGGGGGTCAAGAGCAAAAAGCTGAGTCAGGTCAAGACTCCTGATGGTCTGAATAATAAAAAGGTTAGTAATGTAAGCACTGAAAAGAAGGAGGCGGTCGTGGTGACCGGAACTGGGACCAAACTGAAGCGGCTAAGTCAGGTTAAGACGCCAGAGGCCTTGAAGAATAAAAAGAAACAGACTCCCATGAAAAAGAAGAATCCTAATGCCAAACTGGTGAATTCTTCAAACCCAAAGAAGAAGGTAAAGAAGAATGGACGTGGGTAG 624 0.4343 MVKTNAKDKNSISNKHPPYFEMIAEAILALKERNGSSQPAIAKFIEDKYKKVLPSDFRKFLSVQLRKFVNSDKLVKVKNSYKISCAEKLKIAIKGSTQTAPPTTKAVPSKVKANEKITQRGVKSKKLSQVKTPDGLNNKKVSNVSTEKKEAVVVTGTGTKLKRLSQVKTPEALKNKKKQTPMKKKNPNAKLVNSSNPKKKVKKNGRG* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01903 207 PRINTS Histone H5 signature 2 23 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pte18g01903 207 PRINTS Histone H5 signature 29 46 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pte18g01903 207 PRINTS Histone H5 signature 165 184 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pte18g01903 207 Pfam linker histone H1 and H5 family 16 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte18g01903 207 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 15 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte18g01903 207 SUPERFAMILY "Winged helix" DNA-binding domain 15 90 IPR036390 -
Pte18g01903 207 Gene3D - 12 116 IPR036388 -
Pte18g01903 207 SMART h15plus2 13 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte18g01903 207 CDD H15 13 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte18g01903 207 MobiDBLite consensus disorder prediction 162 207 - -
Pte18g01903 207 MobiDBLite consensus disorder prediction 123 149 - -
Pte18g01903 207 MobiDBLite consensus disorder prediction 120 149 - -
Pte18g01903 207 PANTHER HISTONE H1 7 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01903 Pte-Chr18 29810421 29811472 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01903 22 83 Single Myb Histone (SMH) Gene Family AT1G49950 43.548 9.30e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01903 K11275 - zju:107426309 176.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01903 18 29810421 29811472 Pte18g01903 18 29810421 29811472 RCT