Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01900 ATGACCAGCGAAGCGCATCCACCTAATCACAATCACATGGGTGCCCTCTGTAACGCTGGTGCTGGTGCGGCCGCCGGTGTGCTTGCTGCTACTTTCGTCTGCCCTTTAGATGTGATCAAAACTAGGTTCCAGGTGCACGGCCTGCCAAAGCGTATTGATGGAGGAAGTAAAGGTAGTCTTATAGTTGGCAGCTTACAACAAATATTTCAGAAGGAGGGAGTTCGTGGCATGTACCGTGGGCTTGCTCCAACTGTGCTTGCATTACTTCCAAACTGGGCCGTTTATTTCACTATGTATGAGCAGCTCAAAAGCAAACTTTCTTCTGGCGATGAGAACCATCAACTGTCAATCGGTGCTAATATGGTAGCTGCAGCTGGAGCTGGTGTTGCAACTACTGTTGCTACGAATCCTCTTTGGGTTGTCAAGACAAGACTACAGACGCAAGGTATGCGACCTGGTGTGGTGCCATATAGGAGTACACTGTCTGCATTGAGGAGAATTGCTCATGTAGAAGGCATTCGGGGTTTGTATAGTGGTCTAGTGCCTGCTCTAGCTGGTATTAGTCATGTAGCTATCCAGTTTCCAATGTATGAGAAGATAAAGCTCTATTTGGCTAATCAAGACAACACGACAATGGATAAACTCAGTGCAAGTGATGTTGCCATTGCATCGTCAGTCTCCAAAATATTTGCGTCCACATTGACATATCCACATGAGGTTGTACGTTCTAGGCTTCAAGAGCAAGGTCATCACTCTGAAAAGCGGTACTCTGGGGTAGTTGATTGTGTTAGGAAGGTGTTTCAGCAAGAGGGCATTGCTGGTTTTTACCGCGGCTGTGCCACTAATCTTTTTAGGACAACTCCTGCAGCTGTAATTACATTTACCAGTTTTGAGATGATTCACCGGTTTCTCGTCTCTCTGTATCCACAGCATCACATTTTGTGA 945 0.4635 MTSEAHPPNHNHMGALCNAGAGAAAGVLAATFVCPLDVIKTRFQVHGLPKRIDGGSKGSLIVGSLQQIFQKEGVRGMYRGLAPTVLALLPNWAVYFTMYEQLKSKLSSGDENHQLSIGANMVAAAGAGVATTVATNPLWVVKTRLQTQGMRPGVVPYRSTLSALRRIAHVEGIRGLYSGLVPALAGISHVAIQFPMYEKIKLYLANQDNTTMDKLSASDVAIASSVSKIFASTLTYPHEVVRSRLQEQGHHSEKRYSGVVDCVRKVFQQEGIAGFYRGCATNLFRTTPAAVITFTSFEMIHRFLVSLYPQHHIL* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01900 314 FunFam Nicotinamide adenine dinucleotide transporter 1, chloroplastic 1 111 - -
Pte18g01900 314 PRINTS Mitochondrial carrier protein signature 31 45 IPR002067 GO:0055085
Pte18g01900 314 PRINTS Mitochondrial carrier protein signature 80 100 IPR002067 GO:0055085
Pte18g01900 314 PRINTS Mitochondrial carrier protein signature 18 31 IPR002067 GO:0055085
Pte18g01900 314 PRINTS Mitochondrial carrier protein signature 224 246 IPR002067 GO:0055085
Pte18g01900 314 PRINTS Mitochondrial carrier protein signature 130 148 IPR002067 GO:0055085
Pte18g01900 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 115 203 IPR018108 -
Pte18g01900 314 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 15 308 IPR044712 GO:0006862|GO:0055085
Pte18g01900 314 SUPERFAMILY Mitochondrial carrier 11 299 IPR023395 -
Pte18g01900 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 105 IPR018108 -
Pte18g01900 314 Gene3D Mitochondrial carrier domain 112 306 IPR023395 -
Pte18g01900 314 Gene3D Mitochondrial carrier domain 2 111 IPR023395 -
Pte18g01900 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 215 303 IPR018108 -
Pte18g01900 314 Pfam Mitochondrial carrier protein 218 305 IPR018108 -
Pte18g01900 314 Pfam Mitochondrial carrier protein 15 107 IPR018108 -
Pte18g01900 314 Pfam Mitochondrial carrier protein 114 206 IPR018108 -
Pte18g01900 314 FunFam NAD+ transporter 113 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01900 Pte-Chr18 29787557 29791867 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01900 1 312 Chloroplast and Mitochondria Gene Families AT2G47490 75.000 2.87e-164 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01900 K15115 - tcc:18613629 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01900 18 29787557 29791867 Pte18g01900 18 29787557 29791867 RCT