Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01889 ATGGCTTTTGCCAAGCTGATTACCTTACCCATTCTCATTCTCCTTCTTCTTCTGCTTGCTTCGGCAATTGCAGATAGCTCTCCTACCACTCCTGAATCTCCTGGAAAAGTTTGCCAATCCACCCCAGACCCATCTTATTGCAAATCTGTCCTCCCTAATAACCAAACATCTAATGTCCACGACTATGGCAGGCTTTCACTTCGAAATTCCCTATCCCAATCTCGCAAGTTCTTAAACTTAGTTGAGAGGTATCTCCAACGCCACTCTAGCTTGTCCACCACGGCAGTCCGGGCACTCCAAGATTGCCAGTTGCTCGCTGGGCTGAACATTGATTTCATATCAAGTTCTTTAAAGAAAGTGAACAACACAAGCCAAGTGCTAAACAGCGTGCAAGCTGATGAAGTGCAAACCTTGCTCAGTGCTATCCTTACCAACCAGCAAACTTGCTTGGATGGTCTGCAAACTGCTGCGTCAGCGTGGAGCGTAAGGAATGAACTTTATGCCCCTCTTTCTAACGATACAAAGCTGTACAGCGTCTCTCTAGCCCTCTTTACCAAAGGTTGGGTGCCAAAGCAAAAAAAAGGCAATGTGTGGCGCCCAAATAAGAAACACCTCGGTCATGGACGTTTAGCTCTCAAAATGTCAAGTAGAACCCGTGCTGTATATGATTCAGTTAATCAGCGGCAGGGTCGAACACTTCTACAGAGCACCCCATCCGGGGATGAAGCAGTTTCTGTCATCGATATCGTGACAGTTAGTCAAAATGGAGAAGGCAACTTCACAACCATCAATGATGCAATTGCTGCGGCCCCGAACAACTCCGCTACTACTGGTGCCTACTTCTTAATCTATGTCACAGCCGGTGTGTACGAAGAATACGTGTCTATTCCCAAGAACAAGAGGAATTTGATGATGATTGGTGATGGCATGAATAAAACAATTATCACAGGAAATCGGAGCGTCGTTGATGGTTGGACAACCTTCAATTCTGCAACATTTGCTGTGGTTGCACCAGGATTCGTGGCAGTGAATATGACATTTCGCAACACAGCAGGGGCAGTCAAGCACCAAGCTGTTGCAGTTAGAAATGGAGCAGACTTGTCCACATTTTACAGCTGCAGCTTCGAAGGGTACCAAGACACATTATATGCACATTCACTCAGACAATTCTATAAAGAATGTGACATTTATGGGACGGTAGATTTCATATTTGGCAACGCTGCAGTTGTTTTCCAAAACTGTAACTTGTATCCACGCCTCCCCATGAGTGGCCAATTCAATGCTATCACTGCACAAGGAAGAACAGATCCAAACCAAAACACTGGAACTTCCATTCACAATTGTACAATTAAAGCAGCTTCACAATTGGCTTCGAGTAATGCTAGTGTTGCTACGTACTTGGGGAGGCCTTGGAAGCAGTATTCGAGGACGGTGTATATGCAAACGTATATGGATAGTTTGATTCAACCTGCTGGTTGGCAAGTTTGGGATGGTGACTTTGCATTGAGCACATTGTACTATGCAGAGTTCAATAACACAGGTCCCGGGTCAAGCACGAATAACAGGGTCACATGGCCTGGTTACCATGTGATGAATGCTACAGATGCCGCTAATTTTACGGTGTCTTCCTACTTGTTGGGGAATGATTGGTTGCCTCAAACTGGAGTGCCCTATTCTCCTAACTTGAGTTGA 1692 0.4539 MAFAKLITLPILILLLLLLASAIADSSPTTPESPGKVCQSTPDPSYCKSVLPNNQTSNVHDYGRLSLRNSLSQSRKFLNLVERYLQRHSSLSTTAVRALQDCQLLAGLNIDFISSSLKKVNNTSQVLNSVQADEVQTLLSAILTNQQTCLDGLQTAASAWSVRNELYAPLSNDTKLYSVSLALFTKGWVPKQKKGNVWRPNKKHLGHGRLALKMSSRTRAVYDSVNQRQGRTLLQSTPSGDEAVSVIDIVTVSQNGEGNFTTINDAIAAAPNNSATTGAYFLIYVTAGVYEEYVSIPKNKRNLMMIGDGMNKTIITGNRSVVDGWTTFNSATFAVVAPGFVAVNMTFRNTAGAVKHQAVAVRNGADLSTFYSCSFEGYQDTLYAHSLRQFYKECDIYGTVDFIFGNAAVVFQNCNLYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCTIKAASQLASSNASVATYLGRPWKQYSRTVYMQTYMDSLIQPAGWQVWDGDFALSTLYYAEFNNTGPGSSTNNRVTWPGYHVMNATDAANFTVSSYLLGNDWLPQTGVPYSPNLS* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01889 563 SMART PMEI_2 29 183 IPR006501 GO:0004857
Pte18g01889 563 Pfam Pectinesterase 250 547 IPR000070 GO:0030599|GO:0042545
Pte18g01889 563 SUPERFAMILY Pectin lyase-like 249 560 IPR011050 -
Pte18g01889 563 CDD PMEI-like_3 37 188 - -
Pte18g01889 563 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Pte18g01889 563 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 186 IPR035513 -
Pte18g01889 563 NCBIfam pectinesterase inhibitor domain 10 184 IPR006501 GO:0004857
Pte18g01889 563 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 186 IPR035513 -
Pte18g01889 563 Gene3D - 245 562 IPR012334 -
Pte18g01889 563 FunFam Pectinesterase 243 562 - -
Pte18g01889 563 Pfam Plant invertase/pectin methylesterase inhibitor 36 183 IPR006501 GO:0004857
Pte18g01889 563 FunFam Pectinesterase 35 186 - -
Pte18g01889 563 PANTHER PECTINESTERASE 18 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01889 Pte-Chr18 29724834 29726881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01889 11 562 Carbohydrate Esterase AT1G02810 62.892 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01889 K01051 - rcu:8259897 836.639