Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01861 ATGGAAATGTACGGTCGGAATTCGGGAAGAATTGGGTGGCAATCCGGCACTCAATCGGCGTGGAGCCCTGGAGCCGGTGAGTCCAGGCTTGAAGAGTCCATGTGGCAATTAGGACTTGGTAACAGCCAGTCGTACCCGGAGCGACCTGGTGCACCTCATTGTGTATTTTACATGCGAACTGGGTACTGCGGATATGGTAGCAGGTGCCGTTATAATCATCCTCGTGATCGTGCTGCGGTTGTTGAAGTTGTTAGAGCCACAGGGGAGTACCCAGAACGAGTAGGGGAACCTGAATGTCAGTATTATTTGAAAACTAGGACCTGTAAATTTGGTGCGTCCTGCAAGTTCCACCATCCAAAATATAGAGGTGGAACTTTAAGCCAAGCTGCACTAAATATATTGGGACTCCCATTACGGCAGGGTGAGGAAGAATGCACCTACTATTTAAAGACAGGGCGCTGTAAATTTGGTTTGACTTGTAAATTTCATCATCCTCAACCACCTGGTTCGTCAATACCATCATCTGCACATCAGTTTTATTCACCAGTGCAGTCTCCTCCAGTGCCTCTACCTGAACAATATGGAACTTCCACCAGTTTGAGGGTGGCTAGGCCTCCTATACTGCCTGGTTCATATGTGCAAGGGGCTTATGGTCCTGTGCTTCTTTCTCCAAGCGTTGTCCCCATGCCAGGATGGAATCCTTATTCAGCTCCTCTCAGCCCTTTATCTCCGGGTGCTCAACCTACTGTTGGGGAAACTTCTCTTTATGGGGTACCTTCAACCCTAACATTTGGCAGAGGACATACTTCTGGTACTTCTAGTAGTACCCAGAAGGAACACATATTTCCTGAGAGACCTGGCGAACCTGAATGCCAGTACTACATCAGAACAGGGAATTGTAAATTTGGACTGTCCTGTCGGTTTCATCATCCTCGGGATCGATTCATTACAAGTCCAGTTCTCAGCCCCCTAGGTCTTCCTTTGCGCTCGGGAGCACAGCCTTGTGCATTTTACATGCAAAATGGACAGTGCAAATTTGGATCTACTTGCAAGTTCGACCATCCAGTAGGCGGAGTAAGATTCAGTCCTTCAACACCGTCTCTTGATATTTCAGTTACTTCTTTCCCAGTTGGATCTCTGTTGTCTACCTTGGGTCCTTCGTCAACTTCTGAGGGGCGTGAACTGATCTCAGGGTCCAAAAAGGAATCCTATTCAACTAGAATGCCATCTGCTGGGAACACAACCAGTAGTGCAGTCACCTTAGTTTTTCCCCAAAGTGGGCCTGTCGCTCTCTGA 1296 0.4799 MEMYGRNSGRIGWQSGTQSAWSPGAGESRLEESMWQLGLGNSQSYPERPGAPHCVFYMRTGYCGYGSRCRYNHPRDRAAVVEVVRATGEYPERVGEPECQYYLKTRTCKFGASCKFHHPKYRGGTLSQAALNILGLPLRQGEEECTYYLKTGRCKFGLTCKFHHPQPPGSSIPSSAHQFYSPVQSPPVPLPEQYGTSTSLRVARPPILPGSYVQGAYGPVLLSPSVVPMPGWNPYSAPLSPLSPGAQPTVGETSLYGVPSTLTFGRGHTSGTSSSTQKEHIFPERPGEPECQYYIRTGNCKFGLSCRFHHPRDRFITSPVLSPLGLPLRSGAQPCAFYMQNGQCKFGSTCKFDHPVGGVRFSPSTPSLDISVTSFPVGSLLSTLGPSSTSEGRELISGSKKESYSTRMPSAGNTTSSAVTLVFPQSGPVAL* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01861 431 SUPERFAMILY CCCH zinc finger 142 167 IPR036855 GO:0046872
Pte18g01861 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 287 312 IPR000571 GO:0046872
Pte18g01861 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Pte18g01861 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 333 355 IPR000571 GO:0046872
Pte18g01861 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 54 75 IPR000571 GO:0046872
Pte18g01861 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Pte18g01861 431 ProSiteProfiles Zinc finger C3H1-type profile. 285 313 IPR000571 GO:0046872
Pte18g01861 431 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Pte18g01861 431 Gene3D - 136 189 - -
Pte18g01861 431 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Pte18g01861 431 SUPERFAMILY CCCH zinc finger 332 358 IPR036855 GO:0046872
Pte18g01861 431 SUPERFAMILY CCCH zinc finger 289 314 IPR036855 GO:0046872
Pte18g01861 431 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Pte18g01861 431 Gene3D - 46 127 - -
Pte18g01861 431 Gene3D - 283 363 - -
Pte18g01861 431 MobiDBLite consensus disorder prediction 262 284 - -
Pte18g01861 431 MobiDBLite consensus disorder prediction 384 415 - -
Pte18g01861 431 ProSiteProfiles Zinc finger C3H1-type profile. 329 357 IPR000571 GO:0046872
Pte18g01861 431 MobiDBLite consensus disorder prediction 401 415 - -
Pte18g01861 431 PANTHER PROTEIN PHOSPHATASE RELATED 36 376 - -
Pte18g01861 431 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Pte18g01861 431 MobiDBLite consensus disorder prediction 262 280 - -
Pte18g01861 431 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Pte18g01861 431 SMART c3hfinal6 285 312 IPR000571 GO:0046872
Pte18g01861 431 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Pte18g01861 431 SMART c3hfinal6 329 356 IPR000571 GO:0046872
Pte18g01861 431 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Pte18g01861 431 SUPERFAMILY CCCH zinc finger 97 120 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01861 Pte-Chr18 29510230 29520905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01861 1 406 C2H2 Transcription Factor Family AT5G18550 47.100 1.47e-118 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte18g01861 zf-CCCH 3.6e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01861 - - qsa:O6P43_007128 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01861 18 29510230 29520905 Pte18g01861 18 29510230 29520905 RCT