Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01857 ATGGAAGACACCGCAGTACAGAAGCGAGAGCATTTTGGAAAACTGGAATATGGGTGCGAGCACTACAAGAGGCGATGCAAAATTCGAGCACCTTGCTGTAACAAGATATTCCCTTGTCGCCACTGTCATAATGAAGCAACGAGTTCTCTTCGCAATCCTAAAGAACGCCATGAACTCGTCAGACAGGATGTTAAGCTAGTCACCTGTTCAGTTTGTAACACGGAACAGGAGGTTGCCAAGGTGTGTTCTAATTGTGGCGTTAATATGGGAGAATATTATTGCCCCATTTGCAAATTTTACGACGATGATACAAGTAAAGAGCAATTCCATTGTGACAAGTGTGGGATATGTAGAGTCGGAGGTCGTGATAACTTCTTCCATTGCAAGAAATGTGGATCTTGCTATTCAGTCAGTTTGCTTAACAATCACTTCTGTGTGGAAAATTCAATGAAAAGCCATTGTCCTGTATGTTATGAGTATCTTTTTGACTCAACTCGAGGCACTTCTATTATGAAATGTGGTCACACTATGCACATGGAGTGCTTCCAGGAGATGGCAAATCAAAACCAGTACAGATGTCCCATCTGCTCCAAGACAGTGTTTGAGATGTCTGATAATTGGAGAAATCTAGACCTGGAGATTGAAGCTGTTCGTATGCCTGAAGAATATCGGCACGAGGTCTCGATTCTCTGCAATGATTGCAATACTACTAGCCAAGTTGCTTTTCACATCTTGGGACACAAGTGCTGTCATTGTGCTTCTTACAACACTCGCAGGATATCGGCACCAGAGAATCAATGA 801 0.4282 MEDTAVQKREHFGKLEYGCEHYKRRCKIRAPCCNKIFPCRHCHNEATSSLRNPKERHELVRQDVKLVTCSVCNTEQEVAKVCSNCGVNMGEYYCPICKFYDDDTSKEQFHCDKCGICRVGGRDNFFHCKKCGSCYSVSLLNNHFCVENSMKSHCPVCYEYLFDSTRGTSIMKCGHTMHMECFQEMANQNQYRCPICSKTVFEMSDNWRNLDLEIEAVRMPEEYRHEVSILCNDCNTTSQVAFHILGHKCCHCASYNTRRISAPENQ* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01857 266 ProSiteProfiles Zinc finger CTCHY-type profile. 89 153 IPR017921 -
Pte18g01857 266 SUPERFAMILY CHY zinc finger-like 15 88 IPR037274 GO:0008270
Pte18g01857 266 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 9 264 - -
Pte18g01857 266 SUPERFAMILY RING/U-box 153 203 - -
Pte18g01857 266 Pfam Ring finger domain 153 196 IPR001841 -
Pte18g01857 266 CDD RING-H2_Pirh2-like 153 197 - -
Pte18g01857 266 Pfam CHY zinc finger 19 99 IPR008913 GO:0008270
Pte18g01857 266 Gene3D - 227 265 - -
Pte18g01857 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 226 IPR013083 -
Pte18g01857 266 ProSiteProfiles Zinc finger RING-type profile. 154 197 IPR001841 -
Pte18g01857 266 ProSiteProfiles Zinc finger CHY-type profile. 12 87 IPR008913 GO:0008270
Pte18g01857 266 SUPERFAMILY Zinc hairpin stack 90 147 IPR037275 -
Pte18g01857 266 SMART ring_2 154 196 IPR001841 -
Pte18g01857 266 Pfam Zinc-ribbon 202 258 IPR039512 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01857 Pte-Chr18 29492214 29495839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01857 17 262 C2H2 Transcription Factor Family AT3G18290 41.502 8.35e-55 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01857 K10144 - qsa:O6P43_007118 490.73