Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01851 ATGGGTAGACCTGGTGCAAAGAGGCAGGCGTTGAACGCTAATACATCGGAAGACAATCGGGATGGGAAGCGTAAAGATCGAAGTGTCTTCCATTCTGAAAGTTGTAAGAATGACACCTTGTACGAGGATCTCTGGCAGGTGTGTGCAGGTTCTCTTGTTTATGTTCCGAGAGCAGGGGAGAGAGTCGTTTATTTTCCTCAGGGTCACATTGAACAGGTTGAGGAATGTGCACAAAAAGATGGCCAGATGGAGGTCCCTAACTACAATTTACCTTATAAGATCCTCTGCAAGATCGTTAGTTGTCATCTGAAGGCTGAGGCTCAAACAGACGAGGTGTATGCTCAAATTACCATGATTCCGGAGCCGAAGCAAGATGAGCTTAATTCAGAAGAGGAATATTCTCATCCATCAACCGCCAGGTCTGTTCCATGCTTCTACAGTAAAACACTTACTCCATCGGACATAAGCACTCATGGCGGATTCTCTCTTCCTAGGCGACTAGCTGATGAGTGTCTCCCTCATCTGAATATGTCTCAGGATATACCAACACAGGAGCTTGTTGCAAAGGACTTGCATGGATTTAAATGGCATTTTCGGCATAAGTATCGTGGCCAGCCAAAGAGACACTTGATTACTAGTGGTTGGAGCACATTCTTGAATGCAAAGAATCTGGCTGCTGGAGATTCGTGCATTTTCCTAAGGTTGGGAGAAAATGGAGAACTTCGAATCGGTGTACGCCGAAACATGAAACGACAAAGTAATGCATCAGCTTCTATCTTATCAGGCAGCTGCATGACACATGGAATACTGGCCAGCGCTTCCCATGCTATTTCTACTGGTACAATGTTCACTGTGTACTATCGTCCATGGACAAGTCCCTCTGAATTCATTGTTCCATATGACTTGTACATGAAGTCAATAAAAATCAATTATTCAATTAGAATGCGTCTTAGAATGCACGTTGAAGCAGAAGAATGTCTGAGGAAGAGATATGTAGGCACCATTATCGGAATCGAAGACATTGATGGAGCTAAGTGGCCTGGTTCAGAGTGGAAATGCATCAAGGTGCAATGGGATCCCTCATCAGATGCATTTGTGTGTCCAGAAAGGGTTTCTCCTTGGTGTATCGATCCTACAGAATTTCCTACAAGGAAATCGATTTCTTCAAGTAGACTAAGGAGGGGAGATAATGCACCTCAGACATTTAGCACCTTGCACTATCATGGACATCTGCAATCAAGTCAAGCAGCTCATGTGCAAACTCGACCACTATTATCTGCTGCCCTCTCTCTTGCAAATCCCGCTTTAAATGAAATGCAGGTGGCCGAGGAGCATCAAATGCACATATTGCTTCACAACCCCCTTCAACAATGGTCCACAAAACCATTATCTTTTCCGGATCAGAAGACATTGAATTCAGACCTCCCCTATTTGAGTCCTACAACTTTCACCTCCAATGGTGCATGTGACAGTATTGCAGCGAGCAGAAATGCTTCACTGTCAATTGAGAACTCGATTGATTCCAGTTCTCATAAATGGGGAGGTATTGAATCTAAGGATGAAAATGAAGATCCACTTTCCCAACCTGATGGTTCCAGCAGATACAGGCTTTTTGGAGTAAACTTGGCACGTAGCCATCAGGAGCTCCCTTCACCACAAATTGCCTCTTCTGGCAAAAACTCAAGTCCTCCTCTTCTTGTGCCAACATCTGAGTCAAGCATAGGTGGAAATATTCAAATTTCAGAACCCTCAAAGAGCATCTCAGCAGGAGTTATAGTTGAGAAACAATGGAAGAAATGTGTCCGTCAACCAAGTAGTAGCTGCACAAAGGTTTTCAAGCGTGGAAATCGTCTAGGAAGATCAGTTGACATCAAACTCTTTCATGGTTATGATGAACTAATTTCCGAGCTGGATCTAATGTTTGATTTCAAAGGAAGCTTGGTCAATGGTACTAGTGGATGGCATGTGACCTATATTGATAATGTTGGAGACACGATGTTAGTTGGAGATTGCCCTTGGCAGGAATTTCTGTCCCTGGTAGAAAGGATGCTGGTCTGCCCAGTGGAAGAGTTTGAGAACCAGAATCCTGACTGA 2094 0.4398 MGRPGAKRQALNANTSEDNRDGKRKDRSVFHSESCKNDTLYEDLWQVCAGSLVYVPRAGERVVYFPQGHIEQVEECAQKDGQMEVPNYNLPYKILCKIVSCHLKAEAQTDEVYAQITMIPEPKQDELNSEEEYSHPSTARSVPCFYSKTLTPSDISTHGGFSLPRRLADECLPHLNMSQDIPTQELVAKDLHGFKWHFRHKYRGQPKRHLITSGWSTFLNAKNLAAGDSCIFLRLGENGELRIGVRRNMKRQSNASASILSGSCMTHGILASASHAISTGTMFTVYYRPWTSPSEFIVPYDLYMKSIKINYSIRMRLRMHVEAEECLRKRYVGTIIGIEDIDGAKWPGSEWKCIKVQWDPSSDAFVCPERVSPWCIDPTEFPTRKSISSSRLRRGDNAPQTFSTLHYHGHLQSSQAAHVQTRPLLSAALSLANPALNEMQVAEEHQMHILLHNPLQQWSTKPLSFPDQKTLNSDLPYLSPTTFTSNGACDSIAASRNASLSIENSIDSSSHKWGGIESKDENEDPLSQPDGSSRYRLFGVNLARSHQELPSPQIASSGKNSSPPLLVPTSESSIGGNIQISEPSKSISAGVIVEKQWKKCVRQPSSSCTKVFKRGNRLGRSVDIKLFHGYDELISELDLMFDFKGSLVNGTSGWHVTYIDNVGDTMLVGDCPWQEFLSLVERMLVCPVEEFENQNPD* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01851 697 ProSiteProfiles B3 DNA-binding domain profile. 146 249 IPR003340 GO:0003677
Pte18g01851 697 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 38 692 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte18g01851 697 Gene3D - 144 249 IPR015300 -
Pte18g01851 697 Gene3D - 602 694 - -
Pte18g01851 697 MobiDBLite consensus disorder prediction 1 29 - -
Pte18g01851 697 MobiDBLite consensus disorder prediction 504 531 - -
Pte18g01851 697 Pfam AUX/IAA family 603 685 IPR033389 -
Pte18g01851 697 MobiDBLite consensus disorder prediction 549 579 - -
Pte18g01851 697 Pfam Auxin response factor 273 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte18g01851 697 SUPERFAMILY CAD & PB1 domains 605 682 - -
Pte18g01851 697 FunFam Auxin response factor 310 382 - -
Pte18g01851 697 Gene3D - 310 383 - -
Pte18g01851 697 MobiDBLite consensus disorder prediction 513 527 - -
Pte18g01851 697 SMART B3_2 146 249 IPR003340 GO:0003677
Pte18g01851 697 FunFam Auxin response factor 144 249 - -
Pte18g01851 697 SUPERFAMILY DNA-binding pseudobarrel domain 144 260 IPR015300 -
Pte18g01851 697 ProSiteProfiles PB1 domain profile. 606 688 IPR000270 GO:0005515
Pte18g01851 697 CDD B3_DNA 143 247 IPR003340 GO:0003677
Pte18g01851 697 Pfam B3 DNA binding domain 147 248 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01851 Pte-Chr18 29449073 29459736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01851 605 696 B3 DNA Binding Superfamily AT5G62000 47.826 7.80e-22 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte18g01851 B3 2.1e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01851 - - qsa:O6P43_007108 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01851 18 29449073 29459736 Pte18g01851 18 29449073 29459736 RCT