Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01848 ATGAGCTATACCTTTGTAAGTAGTTTTTTTCATTCATTTATTTTGGATACAGAGCACAAGCTTTTCATTGGAATGCTTCCTAAGAATGTTTCTGAATCAGAAGTCCACTCTCTCTTCTCTAAATATGGAACTATAAAAGAGTTACAAATTCTAAGAGGTTCTCAGCAAACAAGTAAAGGTTGTGCATTCTTGAAGTATGAAACTAAAGAACAAGCCCTTTCTTCCTTGGAAGCAATTAACGGGAAACATAAAATGGAGGGTTCAAGTGTTCCTTTGGTTGTCAAATGGGCAGATACTGAAAAGGAAAGACAAGCTCGCCGAGCTCAAAAAGCACTAGCACAGGCATCTAATATGGCAAATGCTGATTCACAGCATCCATCAATATTTGGTTCTGTACCAATGGGTTACGGTTCCCCATATAATGGCTATGGCTATCAGACTCCTGGGGCTTATGGAATAATGCCATATCGCCTGCCACCTATGCAGAACCAACCTGGCTTCCACAATATGACCCCTCATATGAGTCAAGGAAATGCAATACATCCTGAACTTGCTCCCAGTGTGCAACCGCGAACATATGGAGTGCCCCCTGTAAATTTCGTTGGTTCTTATCCTGCAGTTCCTGGTCTGCAGCACCCCATGGCTTATCCTGGAGGCATGATAAGTCCTCGACCTATGAGTGGTTCGCCTGGTTCCATGCCACCAATGAGTAGCAGATATGCAGCAGCTTCAGGAACCAACAGAAGTTCTGGGGGTCAGGTTGAAGGTTGTTTTACTTTATCATGTCCATCTTACATTAGCCAACAAGTGTCTTTTCGAGTCACTCCATGA 831 0.4296 MSYTFVSSFFHSFILDTEHKLFIGMLPKNVSESEVHSLFSKYGTIKELQILRGSQQTSKGCAFLKYETKEQALSSLEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKALAQASNMANADSQHPSIFGSVPMGYGSPYNGYGYQTPGAYGIMPYRLPPMQNQPGFHNMTPHMSQGNAIHPELAPSVQPRTYGVPPVNFVGSYPAVPGLQHPMAYPGGMISPRPMSGSPGSMPPMSSRYAAASGTNRSSGGQVEGCFTLSCPSYISQQVSFRVTP* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01848 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 99 IPR000504 GO:0003723
Pte18g01848 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 84 IPR000504 GO:0003723
Pte18g01848 276 PANTHER RNA BINDING PROTEIN 17 146 - -
Pte18g01848 276 MobiDBLite consensus disorder prediction 227 251 - -
Pte18g01848 276 PRINTS Paraneoplastic encephalomyelitis antigen family signature 24 39 IPR002343 GO:0003723|GO:1990904
Pte18g01848 276 PRINTS Paraneoplastic encephalomyelitis antigen family signature 80 97 IPR002343 GO:0003723|GO:1990904
Pte18g01848 276 PRINTS Paraneoplastic encephalomyelitis antigen family signature 39 51 IPR002343 GO:0003723|GO:1990904
Pte18g01848 276 SUPERFAMILY RNA-binding domain, RBD 16 114 IPR035979 GO:0003676
Pte18g01848 276 FunFam RNA-binding protein BRN1 isoform X1 16 108 - -
Pte18g01848 276 CDD RRM1_2_CELF1-6_like 20 95 - -
Pte18g01848 276 Gene3D - 16 121 IPR012677 -
Pte18g01848 276 MobiDBLite consensus disorder prediction 231 251 - -
Pte18g01848 276 SMART rrm1_1 20 95 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01848 Pte-Chr18 29431068 29434619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01848 21 105 Eukaryotic Initiation Factors Gene Family AT1G71770 34.118 3.00e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01848 K13207 - gmx:100813239 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01848 18 29431068 29434619 Pte18g01848 18 29431068 29434619 RCT