Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01827 ATGATTCCCTGGGGTGGATTGAGTTGTTGCTTGAGTGGAGCTGCTCTTTATCTTCTGGGTAGAAGTAGTGGCAGGGATGCGGATATTCTTAAATCTGTTGCTCGGGTCAATCACTTGAAGGAATTAGCACAACTGTTAGATGCTGAAGTGTTACCCTTTGTTGTTTCAATTACTGGACGAGTTGGCTCCGAGTCACCAATTAACTGCGAGGCTAGTGGTTTAAGGGGTGTCATTGTCGAAGAAACGGCAGAACGGCATTTTCTGAAGCACAACGATGCTGGTTCTTGGATACAAGATTCTGCTTTAATTTTGTCAATGAGTAAGGAGGTCCCCTGGTACTTGGATGATGGGACGGGTCGTGTACATGTTGTGGGCGCTAGAGGCGCCACAGGTTTTGCTCTACCTGTGGGAAGTGAGGTATTTGAAGAGTCAGGACGGTCCCTAGTCCGTGGGACATTGGATTATCTCCAAGGTCTCAAGATGCTTGGAGTCAAGAGAATTGAGCGAGTACTTCCTGTTGGTACTTCTTTGACTGTTGTTGGTGAGGCTGCCAAAGATGATGTTGGAGCAATCCGCATCCAGAGACCTCACAAAGGGCCATTTTATGTCTCTCCCAAAACCATTGATCAGCTCATTATAAATCTTGGGAAATGGGCAAGGTGGTACAAGTATGCATCTGTGGGCTTGACATTTTTCGGAGCTTACCTAATGGCTAAACATGCTATCCAATTTATCTTGCAAAGAAGAAGACGGTCTGAACTGCAAAAGAGGGTACTTGCTGCAGCAGCGAAGAGATCAGGACAAGACAATGAAGATGAAAAGGCTGGTGGAGGAAATGATGGATGTAATAGTGATCGCTTAATGCCAGATCTATGCGTCATATGTCTTGAGCAGGAATACAATGCTGTTTTTGTTCCGTGTGGTCATATGTGCTGTTGTACAACGTGCTCCTCACATTTGACCAGCTGTCCTCTTTGTCGTCGGCGAATTGAGCAGGTAGTGAAGACTTACCGTCATTGA 1020 0.4588 MIPWGGLSCCLSGAALYLLGRSSGRDADILKSVARVNHLKELAQLLDAEVLPFVVSITGRVGSESPINCEASGLRGVIVEETAERHFLKHNDAGSWIQDSALILSMSKEVPWYLDDGTGRVHVVGARGATGFALPVGSEVFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPVGTSLTVVGEAAKDDVGAIRIQRPHKGPFYVSPKTIDQLIINLGKWARWYKYASVGLTFFGAYLMAKHAIQFILQRRRRSELQKRVLAAAAKRSGQDNEDEKAGGGNDGCNSDRLMPDLCVICLEQEYNAVFVPCGHMCCCTTCSSHLTSCPLCRRRIEQVVKTYRH* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01827 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 338 IPR013083 -
Pte18g01827 339 FunFam E3 ubiquitin-protein ligase SP1 280 338 - -
Pte18g01827 339 PANTHER - 1 306 IPR044231 GO:0004842|GO:0016567
Pte18g01827 339 Pfam E3 Ubiquitin ligase 88 233 IPR022170 GO:0004842|GO:0006996|GO:0016567
Pte18g01827 339 CDD RING-HC_LRSAM1 292 335 - -
Pte18g01827 339 SUPERFAMILY RING/U-box 291 333 - -
Pte18g01827 339 ProSiteProfiles Zinc finger RING-type profile. 292 327 IPR001841 -
Pte18g01827 339 Pfam Zinc finger, C3HC4 type (RING finger) 290 333 - -
Pte18g01827 339 FunFam Baculoviral IAP repeat containing 7 301 337 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01827 1 271 C3H Transcription Factor Family AT1G63900 74.725 4.76e-151 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01827 K15688 - qsa:O6P43_010668 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01827 18 29288817 29293030 Pte18g01827 18 29288817 29293030 RCT