Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01818 ATGGGAATTTCAACAATGTTCATGCACGCACAACCTGCAGCGCTGACCCTACCTCCTGGGGGTCTAAGACATCGTGTCATCAATACTCCACCCCAGAAAGACAAGGTCGTAGTTGTCATGGGAGCCACAGGAACTGGCAAGTCTAGGCTTTCAATCGACCTTGCTACTCGCTTCCCTGCAGAAATCATAAACTCTGATAAAATGCAAGTCTATGAAGGACTTGACATAGCCACAAACAAAATTACCAAGGAAGAACAGCGTGGGGTTCCCCATCATTTGCTAGGAACAGAAGACCCCAACACAGATTTCACAGCAATGAACTTTTGTAACATGGCGTCAGCTGCAATAGAATCCATTTTGGGATGTGGCCGTCTTCCAATCATTGTTGGAGGCTCCAATTCTTACATTGAAGCGTTGATTGACGATGATGATTATCAGTTCCGTTCAAAATATGATTGCTGTTTTCTTTGGGTGGATGTTGCAATGCCTACACTTCATTCATTTGTAACGAAAAGGGTAGATGAAATGGTTGAGCGTGGCATGGTAGAGGAGCTCAGGTCATTTTTCGATCCAGAAGGAGATTACTCTAAGGGGATTAGAAAAGCAATTGGGGCACCAGAGTTTGATCAGTATTTTAGATACGAAGCATTTGCTAGTAAAGAAACTCGTGAAAAGTTGTTTCAACAAGCAATAAGTGAAATGAAAGATAACAACTGCAAATTAGCATGTAGACAATTTGAGAAAATTAATAGGCTTCTGTATGTTAAAGGGTGGAAGATGCATAGGTTAGATGCTTCCCAAGTTTTTAGGAAACATGGGGAGGAAGCAAATAAGGCATGGGAGAAGCTTGTAGCAGAGCCAAGTGCAGATATTGTTCACCAGTTTCTCTCGCACATCGTCCTCTACAGTGATAATGCTGCACTGGATTGTCAAACATGGAGGCTACCGTTGCTACATCAATCCTCTAGCAATGTCCATATCGTCAAAACTCGTGGAGGGCACGCTCCGGGGCTGAAAATACTCTGTTAA 1029 0.4315 MGISTMFMHAQPAALTLPPGGLRHRVINTPPQKDKVVVVMGATGTGKSRLSIDLATRFPAEIINSDKMQVYEGLDIATNKITKEEQRGVPHHLLGTEDPNTDFTAMNFCNMASAAIESILGCGRLPIIVGGSNSYIEALIDDDDYQFRSKYDCCFLWVDVAMPTLHSFVTKRVDEMVERGMVEELRSFFDPEGDYSKGIRKAIGAPEFDQYFRYEAFASKETREKLFQQAISEMKDNNCKLACRQFEKINRLLYVKGWKMHRLDASQVFRKHGEEANKAWEKLVAEPSADIVHQFLSHIVLYSDNAALDCQTWRLPLLHQSSSNVHIVKTRGGHAPGLKILC* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01818 342 FunFam Adenylate isopentenyltransferase 5, chloroplastic 162 260 - -
Pte18g01818 342 Pfam IPP transferase 147 246 - -
Pte18g01818 342 Pfam IPP transferase 69 142 - -
Pte18g01818 342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 144 IPR027417 -
Pte18g01818 342 FunFam Adenylate isopentenyltransferase 5, chloroplastic 33 190 - -
Pte18g01818 342 Gene3D - 33 296 IPR027417 -
Pte18g01818 342 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 33 296 IPR039657 -
Pte18g01818 342 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 162 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01818 Pte-Chr18 29249328 29251130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01818 149 296 C2H2 Transcription Factor Family AT2G27760 26.286 5.75e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01818 K10760 - qsa:O6P43_010653 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01818 18 29249328 29251130 Pte18g01818 18 29249328 29251130 RCT