Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01809 ATGGCAGAACCGCTAAATAGCGGGCTTCAAATGATGTTACAGGCGGCAGTGCAATCGGTTCAGTGGACGTACAGCCTATTCTGGAAGTTTTGTGACCAGCAAGGGGTTCTGATTTGGGGGGATGGGTATTATAATGGAGCAATAAAGACTAGGAAAACAGTACAACCGATGGAAGTGAGTGCCGAGGAGGCATCCTTACAGAGAAGTCAGCAACTGAGAGAGTTGTATGACTCACTGTCAGCTGGAGAGACCAACCAGCCAACACGAAGGCCTTGTGCTGCTTTGTCGCCTGAGGACTTAACTGAGTCTGAGTGGTTCTACTTAATGTGTGTCTCGTTCTCTTTTCCTCTGGGAACCGGATTACCTGGGAAAGCGTATGCAGAGAAACAGCATGTATGGCTGGTGAGTGCAAACGAGGTTGATAGCAAAACATTCTCAAGAGCCATTCTTGCTAAGACTGTGGTATGCATTCCTCTCTTGGACGGCGTCGTCGAACTGGGCACCACTGATAGGGTTGATGAAGACCTTGAATTTATCCAACGCATCAAGAGCTTCTTCATACATCACTCTCCTCCTCAACCAAAACCAGCACTTTCCGAACACTCAACTTCCAACCCGGCAACCTCATCATCGGATCACTCAAGACTCCATTCTCTTCCTATCTCAACCTTTTATAAAATGGCTGAACCTCCCGTTGGCAAGTTTACCAACCAACAAAATATTGAAGACGACGATGACAATGATGAAGAAGACGATGAGATTCAGTCTCAAACAGGCAATGCTGCAGATGCTGAGAACCCTAATTTAACATCCATAATAGGTGTTGAAGCAAGTGAGCTGATGCCTTTGGAGATGTCTGATCAGGATATCAGGCTAGGTTCACCAGAGGATGGGTCAAGCCATTTCGACTCAGACTTCTATTTGCAAGGAGCAAAGGCGAACCTGAACAACGTCGTTGACCATCAACGAGCCGAGCCAACACAGAGGTGGGCATCACGACAAATGGAGCCAGTGCCAATGAGTAACATAGTTGGCATTGGGCTTCGACCATTATTTTCAGTCGCAGTGCCACCCTCATCATCAACGCTAGAAGAAATATTGACAGGAGACGGCGCACATTATTCCCAAACAGTCGCAACCATTCTTAGAAGCCAGTCAAGCAGGTGGACCGACTCATCTTCCATCGGCACAGCCACTTCCTTCACCAAATCGTCATTCACCAATTGGATTCCAAACAAAGAACCCCATTTGCATGGCGCCTCTGTTAAGGGCACATCACAATGGCTCCTCAAGCACATCTTGTTCAGTGTACCACTCCTACATACCAAGCATCGTGACGATAACTCCCGAGATGGAAGTGAAAGCACCACCAGGTTGCGGAAGGTGACTCAACAAGATGAACTCAGTGCCAACCACGTCCTTGCCGAGCGCCGTCGCCGAGAAAAGCTTAACGAAAGGTTTATCTTGCTGAGGTCACTCGTTCCTTTCGTGACCAAAATGGACAAGGCGTCCATATTAGGGGATACCATAGAGTACTTGAAACAATTACGTAGAAGGGTTGAGGAGCTTGAGGCACTTCATCACCAAATGGAAATTGATCAACGATCCAGGACACCAGAGCAACAAAAGAGAATCGGCAATTCAAAGGAAAGGAGTGGGATCACTGTTTCGGAGCGGGCAAGGAGTCGTCCATCTGTATCGGAAAAGAGGAAGAAGAGGATTTTGGAAGGAAGTAGCGGCACCACCACAACGAAGTCCAGGGCAGTAGATGCGTCGACCTCGCTAGCACCGGGTGCAGATGGTGGCACACTGGTGCAGGTTTCAATTATAGAAAGTGACGCATTGTTGGAGCTGCAATGTCAACATAGAGAAGGGGTATTACTTGATATCATGCAAATCCTTCGAGAGCTTCAGATTGAGGTCACGTCGGTGCAGTCCTCAGTGAAAAATGGGATGCTTATGGCAGAGTTGAGGGCTAAGGTGAAAGGAATTGGCAATGGGAAAAAGGCAAGCATTGTGGAAGTGAGAAGGGCCATAAATCAAATCATACCCCATAATGACTGA 2064 0.4767 MAEPLNSGLQMMLQAAVQSVQWTYSLFWKFCDQQGVLIWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYDSLSAGETNQPTRRPCAALSPEDLTESEWFYLMCVSFSFPLGTGLPGKAYAEKQHVWLVSANEVDSKTFSRAILAKTVVCIPLLDGVVELGTTDRVDEDLEFIQRIKSFFIHHSPPQPKPALSEHSTSNPATSSSDHSRLHSLPISTFYKMAEPPVGKFTNQQNIEDDDDNDEEDDEIQSQTGNAADAENPNLTSIIGVEASELMPLEMSDQDIRLGSPEDGSSHFDSDFYLQGAKANLNNVVDHQRAEPTQRWASRQMEPVPMSNIVGIGLRPLFSVAVPPSSSTLEEILTGDGAHYSQTVATILRSQSSRWTDSSSIGTATSFTKSSFTNWIPNKEPHLHGASVKGTSQWLLKHILFSVPLLHTKHRDDNSRDGSESTTRLRKVTQQDELSANHVLAERRRREKLNERFILLRSLVPFVTKMDKASILGDTIEYLKQLRRRVEELEALHHQMEIDQRSRTPEQQKRIGNSKERSGITVSERARSRPSVSEKRKKRILEGSSGTTTTKSRAVDASTSLAPGADGGTLVQVSIIESDALLELQCQHREGVLLDIMQILRELQIEVTSVQSSVKNGMLMAELRAKVKGIGNGKKASIVEVRRAINQIIPHND* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01809 687 SMART finulus 473 522 IPR011598 GO:0046983
Pte18g01809 687 MobiDBLite consensus disorder prediction 232 269 - -
Pte18g01809 687 MobiDBLite consensus disorder prediction 242 256 - -
Pte18g01809 687 MobiDBLite consensus disorder prediction 444 461 - -
Pte18g01809 687 MobiDBLite consensus disorder prediction 530 594 - -
Pte18g01809 687 Coils Coil 506 533 - -
Pte18g01809 687 Pfam Helix-loop-helix DNA-binding domain 470 517 IPR011598 GO:0046983
Pte18g01809 687 Gene3D - 463 528 IPR036638 GO:0046983
Pte18g01809 687 MobiDBLite consensus disorder prediction 190 215 - -
Pte18g01809 687 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 186 IPR025610 -
Pte18g01809 687 MobiDBLite consensus disorder prediction 196 215 - -
Pte18g01809 687 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 469 535 IPR036638 GO:0046983
Pte18g01809 687 MobiDBLite consensus disorder prediction 530 547 - -
Pte18g01809 687 MobiDBLite consensus disorder prediction 554 576 - -
Pte18g01809 687 PANTHER TRANSCRIPTION FACTOR TT8 5 685 - -
Pte18g01809 687 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 467 516 IPR011598 GO:0046983
Pte18g01809 687 MobiDBLite consensus disorder prediction 444 464 - -
Pte18g01809 687 MobiDBLite consensus disorder prediction 577 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01809 Pte-Chr18 29203892 29209213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01809 367 686 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 39.752 1.92e-55 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte18g01809 bHLH-MYC_N 9.1e-48 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01809 - - pvy:116122009 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01809 18 29203892 29209213 Pte18g01809 18 29203892 29209213 RCT