Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01787 ATGCGTCCAATGTTTTCTGTAAAACAAGAGTATGTGGGCGGTTCGAGCTCATCAACGGGCGGTGACCCATCCATGGTACCTCCTCCGCAACCAATGGAGGGACTTCACGATATGGGCCCTCCTCCATTCTTGACCAAGACGTTCGACATGGTCGATGACCCATCTACCAATCACATAGTCTCTTGGAACAGGGGAGGTACTAGTTTTGTTGTTCGGGATCCACATGCATTTTCGACGGGTCTGTTACCTCGACACTTCAAGCATAACAATTTCTCCAGCTTCGTCAGGCAGCTAAATACTTATTATTTTGCGGCAATTGAAGAGAACTCAAGTTCAAGTGCAAGGATGCTTATAGACTCGCTGGCAAACCAAATGGTTTTAGGAAAATTGATCCAGACAAATGGGAGTTCGCAAATGAAGGGTTCCTCCAAGGCCAGAGACATCTTTTACGGAACATTAGGAGGAGGAAGACAATTCCACTGCTTGTTCCTTCCCAACAGACATGGGGACATTGTGTGGAAGTTGGTCGGTTTGGACTGGATGAAGAAATTGACAGGCTGA 561 0.4688 MRPMFSVKQEYVGGSSSSTGGDPSMVPPPQPMEGLHDMGPPPFLTKTFDMVDDPSTNHIVSWNRGGTSFVVRDPHAFSTGLLPRHFKHNNFSSFVRQLNTYYFAAIEENSSSSARMLIDSLANQMVLGKLIQTNGSSQMKGSSKARDIFYGTLGGGRQFHCLFLPNRHGDIVWKLVGLDWMKKLTG* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01787 186 PRINTS Heat shock factor (HSF) domain signature 43 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte18g01787 186 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte18g01787 186 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte18g01787 186 SUPERFAMILY "Winged helix" DNA-binding domain 41 113 IPR036390 -
Pte18g01787 186 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 29 107 IPR027725 -
Pte18g01787 186 Gene3D - 36 140 IPR036388 -
Pte18g01787 186 SMART hsfneu3 39 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte18g01787 186 Pfam HSF-type DNA-binding 43 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte18g01787 186 MobiDBLite consensus disorder prediction 10 35 - -
Pte18g01787 186 FunFam Heat stress transcription factor B-4 35 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01787 Pte-Chr18 29034408 29035642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01787 26 107 HSF AT3G63350 75.610 7.52e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pte18g01787 HSF_DNA-bind 9.4e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01787 K09419 - qsu:112024539 172.17