Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01772 ATGGAAGTTGGACTCAAGAAGGCCGAGCGCCAGATGTGTTTTGAGGAGACTGAACTGAGGCTCGGTTTGCCTGGAAATGGAGGTGGAACTAGCACTGAAGGAGAGGCCGCTAGGAAGAGAGGGTTCTCAGAAAGTGAGACTGACGACTCCGAAACCACCACTGTGGATTTGATGCTCAACCTTTCCTCCAAAGAAGCAGCTGGTGGGAAAGATCTTGACAAGGCCAAGAAGTTGACCAAGGAGAAGATGTTTCGGCCTGCTGATCCGGCAAATCCTCCAGCCAAGGCACAAATTGTGGGTTGGCCACCCGTTCGATCATTCCGGAAGAACATATTAGCTGCCCAGAAAAATAACACCGAAGAAAGTGAAAAGGCAAGTGGCAATGCAACTTTTGTGAAGGTTAGCATGGATGGTGCGCCTTACCTTCGGAAAGTGGACCTCAAGATGTACAAGAGTTACCAAGAACTCTCTGATGCATTAGGCAAGATGTTCAGTTCCTTCACCATACTAGGTAATTGCGGAAACCATGGGATGAAAGATTTCATGAACGAGAGCAAGCTGATGGATCTTCTGAACAACTCCGACTACGTTCCTAGCTATGAAGATAAGGATGGTGATTGGATGCTGGTTGGTGATGTTCCATGGGAGATGTTTGTTGGGTCGTGCAAGCGTTTGCGAATCATGAAAGGAACTGAGGCGATTGGAATTGCTCCAAGAGCAATGGAGAAATGCAAGAACAGAAGCTAG 747 0.4779 MEVGLKKAERQMCFEETELRLGLPGNGGGTSTEGEAARKRGFSESETDDSETTTVDLMLNLSSKEAAGGKDLDKAKKLTKEKMFRPADPANPPAKAQIVGWPPVRSFRKNILAAQKNNTEESEKASGNATFVKVSMDGAPYLRKVDLKMYKSYQELSDALGKMFSSFTILGNCGNHGMKDFMNESKLMDLLNNSDYVPSYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGTEAIGIAPRAMEKCKNRS* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01772 248 SUPERFAMILY CAD & PB1 domains 125 229 - -
Pte18g01772 248 FunFam Auxin-responsive protein 124 240 - -
Pte18g01772 248 ProSiteProfiles PB1 domain profile. 129 230 IPR000270 GO:0005515
Pte18g01772 248 Gene3D - 123 241 - -
Pte18g01772 248 Pfam AUX/IAA family 16 239 IPR033389 -
Pte18g01772 248 MobiDBLite consensus disorder prediction 20 54 - -
Pte18g01772 248 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 14 234 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01772 Pte-Chr18 28942877 28944831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01772 121 238 B3 DNA Binding Superfamily AT4G23980 31.356 8.61e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pte18g01772 AUX_IAA 9.7e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01772 K14484 - qsu:112007559 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01772 18 28942877 28944831 Pte18g01772 18 28942877 28944831 RCT