Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01761 ATGCATACTTCTCTAGCTATGGAGTCTAATAGTCAAGAACAGTACTCCTCCAAGAGCTCAAGCGAGCAAACTGATCGATCAGATTCTGAGCAAACTGATCATGTCAACTATATGATCAGTGGTGGCAGATTCTACGAGTGCGTCTTCTGTAAGAGAGGCTTCGCAACCGCTCAAGCTTTAGGTGGACATATGAATATACACAGGAAGGATAGAGCCAAGACCAAACGCAGCTCAGTCTTGACTTCAAGTTCTAGTAAGCCCAACGAGGATTACGTCAAGGTTAGGTCTTATACGTCAATCCCGACCAATCTGCAGTCCCAATATTATGTGACTGCACCTGATCAGGTACACACATATTATCAAGATTTCTTTGCCCCATCAACAAGTTTTGATTTCCAAAGATCGTCACACCCACAGTACAGTCATGACCCTTATGTGCAAAATCAACGGGCTTTCAATCTGTTTGGTGAAGATTGGAGAAGAAACTTCGGCTGTATAGAGGACGATAAAGGAAAGATGGAGGCCGGCAGTGAAGATAATGACCTTGATTTGGAACTTCGTCTGGGTCATTACCCGTAG 579 0.4404 MHTSLAMESNSQEQYSSKSSSEQTDRSDSEQTDHVNYMISGGRFYECVFCKRGFATAQALGGHMNIHRKDRAKTKRSSVLTSSSSKPNEDYVKVRSYTSIPTNLQSQYYVTAPDQVHTYYQDFFAPSTSFDFQRSSHPQYSHDPYVQNQRAFNLFGEDWRRNFGCIEDDKGKMEAGSEDNDLDLELRLGHYP* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01761 192 Gene3D Classic Zinc Finger 36 99 - -
Pte18g01761 192 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Pte18g01761 192 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Pte18g01761 192 PANTHER OS07G0101800 PROTEIN 7 190 - -
Pte18g01761 192 MobiDBLite consensus disorder prediction 67 87 - -
Pte18g01761 192 MobiDBLite consensus disorder prediction 1 22 - -
Pte18g01761 192 SUPERFAMILY beta-beta-alpha zinc fingers 41 72 IPR036236 -
Pte18g01761 192 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01761 Pte-Chr18 28879921 28880499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01761 43 192 C2H2 Transcription Factor Family AT4G17810 31.373 6.75e-15 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte18g01761 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01761 - - tcc:18613190 147.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01761 18 28879921 28880499 Pte18g01761 18 28879921 28880499 RCT