Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01741 ATGACAGAGAAGCTTGACGCACCCACACATTCATTTCGTCGGCTTAGAAATTCTCTTAAGTTATCAAGCGAAGCTCCAAAAAGAAAAAAGAGACGACCATTGCCTGATAGAAAGTGGTCAAAGCGTGTTTCTAGTGAAGAAAAATGTTTAGAAGAAGTGAGCACAAGATCTGTCTTGGTAACTTCTAGTGATGGAAATCAAGAGACAGTAGAAGTAGCAGACGGAAAAGAATATCAACCATATGTAACTTTAGAAGGTGGGCTGGAAATTCCAGTGAGCATATTTGATGCTTTGTTTGATTATCAGAAGGTTGGTGTCCAATGGTTGTGGGAACTGCATTGCCAAAGAGCAGGTGGGATTATTGGGGATGAGATGGGTCTTGGTAAGACTATCCAGGTCTTATCTTTTCTCGGTGCATTGCATTTTAGTAACATGTACAAACCTAGCATCGTTGTCTGTCCGGTTACACTGCTTAGACAGTGGAAACGTGAAGCCCAAAAGTGGTACCCAGACTTCCATGTGGAGATATTACATGATTCTGCTCATGATCCTTCTGTGAGGAAAAAGCGGGCCAATTCTGACAAATTGGATTATGATACTGATAGTTCAAGTGACAGCAATTACAAGTCCAATGTGCCTTCAAGAAACACAAAAAAATGGGAGACTCTTCTAAAGCGTATCCTAATTTCAGAATCTGGTTTACTTATCACCAGTTACGAGCAGCTTAGGATATTGAGGGACATGTTGCTCGACATTGAATGGGGTTATGCAGTTTTGGACGAAGGACATAGAATTAGAAATCCAAATGCTGAAATAACATTGGTTTGTAAACAGCTACAGACTGTTCACCGTATTATTATGACTGGAGCTCCAATTCAGAATAAATTGACTGAACTGTGGTCTCTATTTGATTTTGTTTTCCCTGGAAAGTTGGGTGTCTTACCCATATTTGAAGTAGAGTTTGCTGTTCCCATAGCTGTTGGAGGATATGCCAATGCTTCGCCACTACAAGTTTCCACAGCTTATAGGTGTGCTGTAGTACTGCGAGATCTAATCATGCCTTATCTTCTCCGGAGGATGAAGGTTGATGTAAATGCTCACCTTCCGAAGAAGACTGAGCATGTGCTATTTTGCAGCCTTACACCTGAGCAACGATCTGCCTATAGAGCATTTCTAGCTAGCACTGAAGTGGAGCAGATTTTGGATGGAAGGAAGAATTCTCTTTATGGAATTGATGTGATGCGCAAGATTTGCAACCACCCTGATCTTCTCGAGAGGGGACATGCATTAAATGATCCAGATTATGGAAATTTGGAACGTAGTGGGAAATTGAAGGTGGTGGCTGAAGTGTTGAAGGTCTGGAAGGAGCAGGGTCATCGTGTTCTACTTTTCACACAAACTCAGCAAATGCTTGATATTGTCGAGAACTTTCTGATGAATGTTGGTTATAGTTACAGGAGAATGGACGGTCTTACTCCTATTAAACAGAGGATGGCCTTAATAGATGAATTCAATGACTCAAATGAGCTGTTCATCTTCATTTTAACAACCAAAGTTGGAGGTTTGGGAGCAAATCTTACTGGTGCAAACAGGGTGATTATCTTTGACCCCGATTGGAACCCTTCAACTGATATGCAGGTGCGTTCTTTAAGGCCAGGGCGAATTGGTCAGAAACGAGATGTCACAGTGTATCGGTTAATTACACGGGGAACTATAGAGGAGAAGGTTTACCACCGTCAGATATACAAACATTTTCTTACAAATAAGATATTGAAGAATCCCCAGCAAAGAAGGTTCTTCAAAGCTCGTGATATGAAAGATCTCTTTACTCTGAAAGATGATGAAAAAACTGATTCAACGGAAACGTCACATATTTTTGGTCAACTAGCTCAAGATATGAATATTGTTGGGACAGACAGAGATAAGCTGGACAAACATGATAAACCTGAAACTTCTGCACCATTTGTTGAGGATGCTACTAATAAAAATGGCGGTCCATCAGATGAAGCACATCCTGAGAAAGAAAAAGTTGAAAATGATGATTCGGTGGATGAAGAAACAAATATATTGAAGAGCCTCTTTGATGCCCACGGCATACATAGTGCTATGAACCATGATGCCATTATGAATGCGCATGATGAGGATAAATTTAGACTTGAAGAGCAAGCTGCTCAGGTTGCGCAAAGAGCTGCAGAAGCTTTACGTCAGTCTCGAATGCTTCGAAGCAGAGACAGTGTCTCCATCCCAACCTGGACTGGAAAATCAGGATGTGCTGGTGCTCCTTCATCTGTTCGCCAGAAGTTTGGTTCAACTGTGAACTCCCTGTTGATGAATAACTGCAAATCAAATGAAGAATTCTCTGATAATGGAGGCAAGAAATTGAATGGCCTTGCTGCCGGGGCAGCAGCTGGTAAGGCATTATCTTCGGCTGAACTACTTGCTCAAATCCGACAGAAGCAAGAAAAGGTCATTGGGGATGGTATGGAGCATCAGATGGGAGCATCCTCCAGTTGTGCTAGTCAAGCAAGATCTCTAGTTTCGAGGGCTTCTAGCGTTTCATCCAGAGTACAACCTGAGGTATTGATTCGTCAGATTTGTACTTTCTTGCAGCAGAGAGGTGGTACTTGCAGTTCATCCACCATAGTTCAGCATTTCAAGAACCGGATACCCTCAGACGATGTAGCCCTCTTCAAGAATCTTCTTAAAGAAATTGCGACACTGCAGAAAGGGCCAGATGGGTCACTTTGGGTTCTGAAACCTGAGTATAAAGATTAG 2775 0.4198 MTEKLDAPTHSFRRLRNSLKLSSEAPKRKKRRPLPDRKWSKRVSSEEKCLEEVSTRSVLVTSSDGNQETVEVADGKEYQPYVTLEGGLEIPVSIFDALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAQKWYPDFHVEILHDSAHDPSVRKKRANSDKLDYDTDSSSDSNYKSNVPSRNTKKWETLLKRILISESGLLITSYEQLRILRDMLLDIEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPIFEVEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKVDVNAHLPKKTEHVLFCSLTPEQRSAYRAFLASTEVEQILDGRKNSLYGIDVMRKICNHPDLLERGHALNDPDYGNLERSGKLKVVAEVLKVWKEQGHRVLLFTQTQQMLDIVENFLMNVGYSYRRMDGLTPIKQRMALIDEFNDSNELFIFILTTKVGGLGANLTGANRVIIFDPDWNPSTDMQVRSLRPGRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARDMKDLFTLKDDEKTDSTETSHIFGQLAQDMNIVGTDRDKLDKHDKPETSAPFVEDATNKNGGPSDEAHPEKEKVENDDSVDEETNILKSLFDAHGIHSAMNHDAIMNAHDEDKFRLEEQAAQVAQRAAEALRQSRMLRSRDSVSIPTWTGKSGCAGAPSSVRQKFGSTVNSLLMNNCKSNEEFSDNGGKKLNGLAAGAAAGKALSSAELLAQIRQKQEKVIGDGMEHQMGASSSCASQARSLVSRASSVSSRVQPEVLIRQICTFLQQRGGTCSSSTIVQHFKNRIPSDDVALFKNLLKEIATLQKGPDGSLWVLKPEYKD* 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01741 924 FunFam Protein CHROMATIN REMODELING 8 76 358 - -
Pte18g01741 924 FunFam DNA excision repair protein ERCC-6 366 646 - -
Pte18g01741 924 MobiDBLite consensus disorder prediction 667 684 - -
Pte18g01741 924 Pfam Helicase conserved C-terminal domain 445 556 IPR001650 -
Pte18g01741 924 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 110 309 IPR014001 -
Pte18g01741 924 Coils Coil 716 736 - -
Pte18g01741 924 SMART helicmild6 472 553 IPR001650 -
Pte18g01741 924 Pfam SNF2-related domain 101 423 IPR000330 GO:0005524|GO:0140658
Pte18g01741 924 MobiDBLite consensus disorder prediction 640 684 - -
Pte18g01741 924 Gene3D - 75 358 IPR038718 -
Pte18g01741 924 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 445 606 IPR001650 -
Pte18g01741 924 MobiDBLite consensus disorder prediction 18 44 - -
Pte18g01741 924 CDD CSB_WHD 857 923 - -
Pte18g01741 924 MobiDBLite consensus disorder prediction 185 202 - -
Pte18g01741 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 620 IPR027417 -
Pte18g01741 924 MobiDBLite consensus disorder prediction 185 214 - -
Pte18g01741 924 CDD SF2_C_SNF 441 567 - -
Pte18g01741 924 SMART ultradead3 94 320 IPR014001 -
Pte18g01741 924 PANTHER SNF2/RAD54 FAMILY MEMBER 24 905 - -
Pte18g01741 924 CDD DEXHc_ERCC6 98 308 - -
Pte18g01741 924 Gene3D - 369 640 IPR027417 -
Pte18g01741 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 359 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01741 Pte-Chr18 28748936 28752950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01741 437 610 RAD5 or RAD16-like Gene Family AT5G22750 31.609 2.74e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte18g01741 SNF2_N 9.1e-61 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01741 K10841 - qsa:O6P43_010489 1324.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01741 18 28748936 28752950 Pte18g01741 18 28748936 28752950 RCT