Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01739 ATGGAACATGTCGTTGGTGGAAAGTTCAAGCTTGGGAGGAAGATTGGGAGTGGCTCTTTCGGAGAGCTTTATCTGGGGGTTAATATACAAACAGGAGAAGAGGTCGCTGTTAAGATGGAACAATCAAAGACCAAGCATCCGCAGCTTCATTATGAGTCAAAATTGTATGTGCTGCTTCAAGGCGGGACGGGGGTTCCTCATATCAAGTGGTTTGGGGTTGAAGGAGAGTATAATATCATGGTGATTGACCTTCTTGGACCGAGTCTGGAAGATTTATTTAATTACTGCAATCGGAAGTTCACCTTGAAAACAGTGTTGATGCTTGCTGATCAATTAATCAACAGAGTGGAATACATGCATTCAAGAGGTTTTCTCCATCGTGATATAAAGCCCGACAATTTTCTCATGGGCCTTGGGCGTAAAGCCAACCAGGTGTATGTCATTGACTACGGCCTTGCAAAGAAGTATAGGGATCTTCAGACTCATAAGCACATACCATATAGGGAAAACAAGAATCTCACAGGCACAGCTCGCTATGCCAGTGTTAACACTCATCTTGGAATTGAGCAAAGCAGAAGGGATGATCTGGAATCTCTAGGTTATGTCCTCATGTATTTTATCAGAGGAAGCCTTCCTTGGCAGGGATTGAAAGCTGGCACAAAAAAACAGAAGTATGACAAAATAAGTGAGAAGAAGATGTCCACCCCTATAGAGGTTCTCTGCAAATCATATCCATCAGAGTTTGTATCATACTTCCACTACTGCAGATCATTGCGGTTTGAGGACAAGCCAGATTATTCTTATTTGAAGAGGCTTTTTAGAGACTTGTTCATTCGAGAAGGCTATCAATTTGACTACGTCTTTGACTGGACTATATTGAAGTATCCTCAGATTGGTTCCAGCTCTAAAGGAAGGCTTGGGTCTGGCAAAATGGGTGCAAGTGCAGGACCATCTGCACAAAAACCAGAAAAGATCTCAGTTGGCAAGGAGATTCGAGAGAAGTTCTCTGGTGCAGTTGAAGCATTTTCCAGGAGGAACAACGCAAGTTCAAGTCCACACGGTGAACATTCCAAACATAGAACCTTTGATGGTGTACATGCGACGAAGAATATGCAGCATGACACAGACAAGATACGAAGTTCATCCCGGTATGGTAGCACTTCCAGAAAAGCTATGATCACATCAAGCAGGCCAAGTTCCTCTGGTGACCATCATAGTGAAGGACGTGCTGATCGTCTGGTTTCAAGTGGCAGCAGGCAATTTTCTGCTAGTAGGATCCAACCTGGATATGAGGCGAAGAATTCATCATTTGCTCGCACATCAACTGCACGAGGAAGTCGTGATGATCCTCTTAGGAGCTTTGAGATGCTTTCTATCAGGAAATAG 1386 0.4365 MEHVVGGKFKLGRKIGSGSFGELYLGVNIQTGEEVAVKMEQSKTKHPQLHYESKLYVLLQGGTGVPHIKWFGVEGEYNIMVIDLLGPSLEDLFNYCNRKFTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYVIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFIRGSLPWQGLKAGTKKQKYDKISEKKMSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSKGRLGSGKMGASAGPSAQKPEKISVGKEIREKFSGAVEAFSRRNNASSSPHGEHSKHRTFDGVHATKNMQHDTDKIRSSSRYGSTSRKAMITSSRPSSSGDHHSEGRADRLVSSGSRQFSASRIQPGYEAKNSSFARTSTARGSRDDPLRSFEMLSIRK* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01739 461 MobiDBLite consensus disorder prediction 381 401 - -
Pte18g01739 461 MobiDBLite consensus disorder prediction 413 443 - -
Pte18g01739 461 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Pte18g01739 461 MobiDBLite consensus disorder prediction 344 461 - -
Pte18g01739 461 CDD STKc_CK1_delta_epsilon 8 282 - -
Pte18g01739 461 FunFam Putative Casein kinase I 1 85 - -
Pte18g01739 461 FunFam Casein kinase 1-like protein 1 330 - -
Pte18g01739 461 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte18g01739 461 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Pte18g01739 461 MobiDBLite consensus disorder prediction 302 327 - -
Pte18g01739 461 MobiDBLite consensus disorder prediction 351 380 - -
Pte18g01739 461 MobiDBLite consensus disorder prediction 445 461 - -
Pte18g01739 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Pte18g01739 461 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte18g01739 461 Gene3D Transferase(Phosphotransferase) domain 1 1 335 - -
Pte18g01739 461 SMART serkin_6 9 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte18g01739 461 PANTHER CASEIN KINASE-RELATED 8 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01739 Pte-Chr18 28706806 28712975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01739 8 213 MAP Kinase Kinase Kinase AT3G06030 25.926 2.04e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Pte18g01739 Pkinase 1.9e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01739 K08960 - qsa:O6P43_010486 808.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01739 18 28706806 28712975 Pte18g01739 18 28706806 28712975 RCT