LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte18g01730	ATGGAGTCGGATGAGGGTAAGCTTTTCGTAGGAGGGGTGGCGTGGGATACAGCAGAAGACAGTCTTGCTAATCATTTCAGCAAGTACGGCGAGGTCACTGAGGCTGTGATCATGCGGGACAAGGTCAGTGGACGACCTCGAGGCTTTGCTTTCGTCATCTTCTCCGACCCCTCTGTCATCGACAGGGTTCTTCAGGAATCTCATATCGTCGATGGCCGCACGGTTGAGGCCAAAAGGGCCTTGTCAAGAGAGGAACAGCAATTTTCTTCTAGAGATGGGAATTTTAGTGCTGGAAAAAATTCAGGGAAAGGGGGAAATTTTAAAACAAAAAAGATATTTGTTGGCGGGTTGCCTTCAATGCTGACAGAAGATCAATTTCTTCAATATTTTGAGAATTATGGTCGTGTAACTGATGTAGTGATAATGTATGACCAGAATACACAACGGCCTCGTGGTTTTGGTTTCATAACATTTCAATCTGAAGATTCTGTTGATAGTGTTTTACACAAAACTTTTCATGAGTTAGATGGTAAATCAGTAGAGGTAAAACGAGCATTACCAAAAGATGCTAATCCAGGAGGTGGTAGCCGCATGGGAGGCTATCAAGGCCATGGTGCCTCTGGTGTCAATTCGAATACATTTGATAGTCAGATGGATGGAAATAGGTACATGCAACCTCAAGCCACTGGAGGTGGGTTTCCACCTTATCCTGGTTATATGACCCCAGGTTTTGGTTATGGGGCTTATGGTAGTTATGGTGTTGGTGGTTATGGAAGTACAGCCAGTGGCTTTGCCGGTCCATATGGAAACCCAAATACTCCAAGTGCTGCCTATGTTGGTGGAACACCTGGTGTTCCCAAAAATGCTTGGAGCAACCAAGTGGCTTCAGGATATGGTGGTTCTGGTTATGGAGCAAATGCAAGCTATGCATATACAGCTCCTTGGAGCATCCCTGGGGGTGGTGTTACTGTTTCTGTACCTAACGGTCAATCTGGATCTTCTGCCTATCCAAGTCATGGATATGGATGTGGTAGCAATGGAGGAAATAGTGGCTCTAATTCTGGTGGGTGTGTTCCTAACGCTGATGGTGGTGGTCTCAGTGGAGGAAAGCAACAAGAATTTTGCAGTGATCATGCTAGCAGTGGGTATGGGGACACCCTTGAAAAAGCGGGTTACTCGAGAGAAAGCTACCCCTCACAATCAACTGATTGTTATGGTGGTGGGTTTAGTAGTTCTCAGTCAAGGAGGGCGTAA	1254	0.4593	MESDEGKLFVGGVAWDTAEDSLANHFSKYGEVTEAVIMRDKVSGRPRGFAFVIFSDPSVIDRVLQESHIVDGRTVEAKRALSREEQQFSSRDGNFSAGKNSGKGGNFKTKKIFVGGLPSMLTEDQFLQYFENYGRVTDVVIMYDQNTQRPRGFGFITFQSEDSVDSVLHKTFHELDGKSVEVKRALPKDANPGGGSRMGGYQGHGASGVNSNTFDSQMDGNRYMQPQATGGGFPPYPGYMTPGFGYGAYGSYGVGGYGSTASGFAGPYGNPNTPSAAYVGGTPGVPKNAWSNQVASGYGGSGYGANASYAYTAPWSIPGGGVTVSVPNGQSGSSAYPSHGYGCGSNGGNSGSNSGGCVPNADGGGLSGGKQQEFCSDHASSGYGDTLEKAGYSRESYPSQSTDCYGGGFSSSQSRRA*	418

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte18g01730	417	MobiDBLite	consensus disorder prediction	81	102	-	-
	Pte18g01730	417	CDD	RRM1_hnRNPA_hnRNPD_like	8	78	-	-
	Pte18g01730	417	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	6	82	IPR000504	GO:0003723
	Pte18g01730	417	MobiDBLite	consensus disorder prediction	87	102	-	-
	Pte18g01730	417	SUPERFAMILY	RNA-binding domain, RBD	3	104	IPR035979	GO:0003676
	Pte18g01730	417	Gene3D	-	4	88	IPR012677	-
	Pte18g01730	417	PANTHER	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1	1	414	-	-
	Pte18g01730	417	SMART	rrm1_1	7	78	IPR000504	GO:0003723
	Pte18g01730	417	SMART	rrm1_1	111	183	IPR000504	GO:0003723
	Pte18g01730	417	MobiDBLite	consensus disorder prediction	393	417	-	-
	Pte18g01730	417	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	112	170	IPR000504	GO:0003723
	Pte18g01730	417	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	8	74	IPR000504	GO:0003723
	Pte18g01730	417	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	110	187	IPR000504	GO:0003723
	Pte18g01730	417	FunFam	Heterogeneous nuclear ribonucleoprotein 1	107	194	-	-
	Pte18g01730	417	CDD	RRM2_Hrp1p	111	188	-	-
	Pte18g01730	417	FunFam	Heterogeneous nuclear ribonucleoprotein 1	5	87	-	-
	Pte18g01730	417	SUPERFAMILY	RNA-binding domain, RBD	109	209	IPR035979	GO:0003676
	Pte18g01730	417	Gene3D	-	107	195	IPR012677	-
	Pte18g01730	417	MobiDBLite	consensus disorder prediction	386	417	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte18g01730	Pte-Chr18	28625083	28627506	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte18g01730	8	244	Eukaryotic Initiation Factors Gene Family	AT2G23350	27.757	1.49e-12	67.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte18g01730	K14411		-	qsa:O6P43_010473	533.487