Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01700 ATGGCGGCATCGAGGAGGCTACGAGATCTTCAATCTCAACCGGCTAACAAGGTATGTGTTGATTGCGCTCAGAAGAATCCACAATGGGCTTCTGTTTCATACGGCGTCTTCATGTGCTTAGAGTGTTCCGGCAAGCATCGGGGTCTCGGCGTTCACATCTCCTTCGTCCGATCCGTTACTATGGACTCCTGGTCCGAGATCCAGATCAAGAAGATGGAATCTGGCGGTAATGACAAGCTCAACGCTTTCTTTGCTCAGTATGGAATACCCAAAGAGACGGACATCGTTGCCAAGTACAACAGTAACGCTGCCAGTATATACAGAGATCGAATCCAAGCTCTGGCTGAAGGTCGACCATGGCGCGATCCACCTATTGTCAAGGAAAATATCGGCGGGAATAATAGGAAGCCACCTTTGTCACACAGCAGTGGTGGTGGTGGTGGATATAATAGTATTGGCAAAAGTAGTGGAGGATGGGATAGTTGGGATAACGACGGCGACGACGGGTATAGATCTTCTTCTAGCGATATCAGGAGAAACCAATCCACTGGAAATATGAGAGGTTCCAATGGTGTGGGTGGAGCTCCAGTGAGGTCGAGATCCACCGAGGACATTTACACGCGGTCCCAATTGGAGGCATCTGCTGGTAATAAAGAGAGCTTTTTTGCTAGGAAGATGGCTGAGAATGATTCCAGACCTGAAGGGCTTCCACCTTCACAAGGAGGCAAGTACGTTGGATTCGGATCAAGTCCTGCACCTGCACCGGGAAATAATAATGCACAAACTGATTATTTCTCTGTTGTTTCTCAGGGATTTGGTAAATTGTCACTGGTTGCTGCCTCTGCAGCGCAGTCTGCTGCTAATGTTGTGCAGTCAGGGAGTAAAGAGATCACTACCAAGGTAGTAAAGGAAGGTGGGTATGATCACAAGGTCCATGAAACTGTCAACGTGGTTACTGAAAAGACAACTGAATTTGGACAAAGGACTTGGGGTTTTATGAAAGGTGTTATGGCAGTGGCTAGTCAAAAGGTTGAGGAGTACACAAAAGAAGGTGGTAGAAACTGGAGTGGTGATAACTGGCAGCGAAATGAAAATGAGAAAAATGGTCATTATCAAGAGTTCAATCATGATAGCAAAGCTTGGAATTCTTCTGGAGGAGGAAAGTCTTCATCAGGTGGGCAGTTCAATTCTTTCAGCTCTAGCTCATGGGATGATTGGGACCAACAAGATACTAGGAAGCAAGAACCGGAAAAAGCAACAAAATCTAACAAACAGTCTTCATCAGGCGGGCAGCTCAATTCTGTCAGGTCTAGCTCGTGGGATGATTGGGACCAACAAGGTACTAGGAAGCAAGAACCGGTTAAAGCAACATCATCCAACAATCAGTCTTCATCGCTTGGTTTCAGCTCTAGCTCGTGGGATGATTGGGACCAGCAAGATTCTAGGAAGCAAGAACCTGCAAAAGCAGCAGCGTGCAACAAAAATGATGGTTGGGCTGGCTGGGATGATGCAAAAGACGATGGATATGATCATTTCTACAACAGTAACCCTGATAGGAAAACTGTTGGTCACGATGGGAAGTCAGATTCAGGATGGACTGGTGGAGGATTTCTTTAA 1617 0.4657 MAASRRLRDLQSQPANKVCVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMESGGNDKLNAFFAQYGIPKETDIVAKYNSNAASIYRDRIQALAEGRPWRDPPIVKENIGGNNRKPPLSHSSGGGGGYNSIGKSSGGWDSWDNDGDDGYRSSSSDIRRNQSTGNMRGSNGVGGAPVRSRSTEDIYTRSQLEASAGNKESFFARKMAENDSRPEGLPPSQGGKYVGFGSSPAPAPGNNNAQTDYFSVVSQGFGKLSLVAASAAQSAANVVQSGSKEITTKVVKEGGYDHKVHETVNVVTEKTTEFGQRTWGFMKGVMAVASQKVEEYTKEGGRNWSGDNWQRNENEKNGHYQEFNHDSKAWNSSGGGKSSSGGQFNSFSSSSWDDWDQQDTRKQEPEKATKSNKQSSSGGQLNSVRSSSWDDWDQQGTRKQEPVKATSSNNQSSSLGFSSSSWDDWDQQDSRKQEPAKAAACNKNDGWAGWDDAKDDGYDHFYNSNPDRKTVGHDGKSDSGWTGGGFL* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01700 538 Gene3D Arf GTPase activating protein 1 124 IPR038508 -
Pte18g01700 538 SMART arf_gap_3 1 120 IPR001164 GO:0005096
Pte18g01700 538 MobiDBLite consensus disorder prediction 450 475 - -
Pte18g01700 538 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 425 IPR044519 GO:0005096|GO:0016192
Pte18g01700 538 MobiDBLite consensus disorder prediction 499 526 - -
Pte18g01700 538 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Pte18g01700 538 MobiDBLite consensus disorder prediction 375 405 - -
Pte18g01700 538 MobiDBLite consensus disorder prediction 375 538 - -
Pte18g01700 538 MobiDBLite consensus disorder prediction 118 202 - -
Pte18g01700 538 MobiDBLite consensus disorder prediction 421 442 - -
Pte18g01700 538 Pfam Putative GTPase activating protein for Arf 5 98 IPR001164 GO:0005096
Pte18g01700 538 MobiDBLite consensus disorder prediction 135 158 - -
Pte18g01700 538 FunFam ADP-ribosylation factor GTPase-activating protein 1 129 - -
Pte18g01700 538 CDD ArfGap_ArfGap1 3 117 - -
Pte18g01700 538 MobiDBLite consensus disorder prediction 227 258 - -
Pte18g01700 538 MobiDBLite consensus disorder prediction 175 189 - -
Pte18g01700 538 SUPERFAMILY ArfGap/RecO-like zinc finger 5 114 IPR037278 -
Pte18g01700 538 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Pte18g01700 538 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Pte18g01700 538 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Pte18g01700 538 MobiDBLite consensus disorder prediction 406 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01700 Pte-Chr18 28373414 28376789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01700 5 87 C2H2 Transcription Factor Family AT4G05330 51.190 2.46e-23 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01700 K12492 - pvy:116134424 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01700 18 28373414 28376789 Pte18g01700 18 28373414 28376789 RCT