Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01698 ATGGCCTTCTTCTCCGGCGTGCGACACCTCCTTCGAGATTCTTCCAGAGCTTCATTGATTTTCCAGTCGCAGCTCACTCCCATCCGTTTCAGTTGCACTCTTACATCTCCAAAGCTCTTCGTCAGTGGTCTTTCAAGGCTCACAACAGATGAAAAGCTTAAGGAAGCATTTTCTCCCTTTGGGGAGCTGCGCGAAGCTAAAGTCATAGTGGACAGAGCTTCAGGGAGATCAAAAGGATTTGCTTTCGTGACTTATTCGACCATAGAAGAAGCAGAGAAGGCCAGAGAGGGAATGAATGCTAAGTTCTTGGATGGATGGGTTATTTTTATAGACCCTGCCAAGCCAAGGGAACCTAGACCTCCACCTCAGCAGCAGCATCCTGATACATCTCAAACCGGATACACCGTCAATAAGACCGTTGGATGGTGCGGTTGA 435 0.4828 MAFFSGVRHLLRDSSRASLIFQSQLTPIRFSCTLTSPKLFVSGLSRLTTDEKLKEAFSPFGELREAKVIVDRASGRSKGFAFVTYSTIEEAEKAREGMNAKFLDGWVIFIDPAKPREPRPPPQQQHPDTSQTGYTVNKTVGWCG* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01698 144 SUPERFAMILY RNA-binding domain, RBD 36 130 IPR035979 GO:0003676
Pte18g01698 144 MobiDBLite consensus disorder prediction 113 136 - -
Pte18g01698 144 FunFam RNA binding protein 24 138 - -
Pte18g01698 144 PANTHER NUCLEOLAR PROTEIN 8 23 143 - -
Pte18g01698 144 SMART rrm1_1 38 111 IPR000504 GO:0003723
Pte18g01698 144 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Pte18g01698 144 Gene3D - 32 139 IPR012677 -
Pte18g01698 144 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 105 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01698 Pte-Chr18 28355907 28358209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01698 38 135 Eukaryotic Initiation Factors Gene Family AT3G16380 34.694 6.77e-13 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01698 - - qsa:O6P43_006775 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01698 18 28355907 28358209 Pte18g01698 18 28355907 28358209 RCT