Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01677 ATGGGGAACGTCCATGACCATCATCGCCATCGCAAACAGAAACAGAACTGTAACGGAGGCACTGCTGGCACTTCTAGCTCCGTTAATCCTCAGAGACCGTGCCGTCCACCCTTTAAATATGATGGTCCCTCTGATACTGAACTCGAAGTCCAGAACAACATGCTCACCTGGCCGTATGCTCATGTGGACTCAAGACTACGAGCTCTGGCTGCTCAGGCTGAAGGGTTCGGTCGCTATGCTATTGGCGGACTTCATGGTCCTCTTTATCATGTCAACACCTTAGCAGATGATGGCCCTGGATCACTACGTCAAGCTTGCCGTACAAAAGGACCACTATGGATTGTATTTGAGATTTCAGGAGTTATCCATCTATCTTCAATGTTGACTGTGTCATCTTTCAAGACGATTGATGGTCGAGGCCAAAGGATAAAGTTCACGGGGAAAGGATTGAGGCTGAAGGAGTGTGAACATGTGATTATATGCAATTTGGAGTTTGAAGGTGGCAGAGGTCCTGATATTGATGGCATTCAGATTAAGCCTAACTCAAAGCACATCTGGATAGACAGGTGCAGTCTACGTGACTATGATGATGGATTAATTGACATCACTCGAGGAAGCACAGACATTACAGTTTCTAGATGTCACTTTTCACAGCATGACAAAACCATGCTCATTGGAGCAGATCCTAAGCACATCGATGATAGATGCATCAGGGTCACGATTCACCATTGCTTTTTTGATGGAACTCGACAGAGGCATCCTCGTGTTAGATTTGCGAAAGTACATCTTTACAATAACTACATCAGAAACTGGGGCATTTATGCTGTTTGTGCAAGTGTGGAATCACAGATATACTCTCATTGCAATATCTATGAAGCTGGGCAAAAGAAGGTGGCATTTAAGTATCTCCCAGAGAAGGCAGCGGACAGGGAAGATGCAGACGCTGGTTCCATAAGGTCTGAGGGGGACTTATTCGTGTGTGGAACTCAATCAGGGTTGATGAGCGAGACTGTCAGTGCGTTTCATCCTAGTGAGTACTATCCAACATGGACAGTTGCCCCACCTACAGACGAACTAAAGCATCTCCTGCAGCACTGCACAGGGTGGCACAGTGTTTCGCGGCCACCAGATGAGCCAGTGGTTATGCAGCAGCCACAAGCTTCCTAA 1167 0.4679 MGNVHDHHRHRKQKQNCNGGTAGTSSSVNPQRPCRPPFKYDGPSDTELEVQNNMLTWPYAHVDSRLRALAAQAEGFGRYAIGGLHGPLYHVNTLADDGPGSLRQACRTKGPLWIVFEISGVIHLSSMLTVSSFKTIDGRGQRIKFTGKGLRLKECEHVIICNLEFEGGRGPDIDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRGSTDITVSRCHFSQHDKTMLIGADPKHIDDRCIRVTIHHCFFDGTRQRHPRVRFAKVHLYNNYIRNWGIYAVCASVESQIYSHCNIYEAGQKKVAFKYLPEKAADREDADAGSIRSEGDLFVCGTQSGLMSETVSAFHPSEYYPTWTVAPPTDELKHLLQHCTGWHSVSRPPDEPVVMQQPQAS* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01677 388 Gene3D - 56 367 IPR012334 -
Pte18g01677 388 PANTHER PECTATE LYASE 18-RELATED 60 335 IPR045032 GO:0030570
Pte18g01677 388 MobiDBLite consensus disorder prediction 1 15 - -
Pte18g01677 388 MobiDBLite consensus disorder prediction 1 43 - -
Pte18g01677 388 SUPERFAMILY Pectin lyase-like 72 373 IPR011050 -
Pte18g01677 388 Pfam Pectate lyase 128 290 IPR002022 -
Pte18g01677 388 MobiDBLite consensus disorder prediction 16 32 - -
Pte18g01677 388 PRINTS Pollen allergen Amb family signature 127 143 IPR018082 -
Pte18g01677 388 PRINTS Pollen allergen Amb family signature 274 293 IPR018082 -
Pte18g01677 388 PRINTS Pollen allergen Amb family signature 72 89 IPR018082 -
Pte18g01677 388 SMART amb_all 84 297 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01677 Pte-Chr18 28029480 28032043 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01677 94 380 Polysaccharide Lyase AT3G55140 73.356 2.57e-163 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01677 K01728 - cit:102614939 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01677 18 28029480 28032043 Pte18g01677 18 28029480 28032043 RCT