Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01654 ATGTTGGACCTTAATCTGAACGCTGTTTGTTCTGATTCTGATGAGATGGTCGGTGACCATATTACTCAACTGTCTGATAGCCAAATAGATAATACTAATAGCTCCATAAGCTTTAACTCCTCTGTTTCCGTCGTGAATGCTGATACCTCTAACAACACTTGTGATGAAGACTCTTGCTCTTATGGAGATGCTTTCGCACATAGCTTTGCTATTCTCAATGATAATCAGGCCGCTTCCAAAGCCTCTCTTCAACTTCAACGTGATCAGCAACCTCAACCTGACAAACAACTCCATCGCAATGAGCTTGCCATTGAACCTTTTCCGGCAACTGGAGTCGGACAACCTAATGGTGTTTCTGCGGATACTCCTTCTGCTACTGGGCTCGCAATGTCTTCGAGGAAGGGGTGCTTGGAATTTTTCAGCAAGGAAGTGGGCTGTGGCGGTCTAATGAGGCAGAGGATTCTATCCCAGCAGCTGCAGCAACCGAGACAGCAGGTGAAAAATAGTCGGCGAGGACCAAGGCCTAAGAGCTCTCAGTATCGAGGTGTGACTTTTTATCGTAGAACTGGAAGATGGGAATCTCATATCTGGGATTGTGGTAAACAAGTCTACTTGGGCGGATTCGACACTGCGTATGCTGCAGCCAGGGCATATGATCGAGCTGCAATAAAGTTCCGTGGAATGGGTGCAGACATTAATTTCAATATAAGCGATTATGACGAAGATATGAAACAGACGAATAACTTCACCAAGGAAGAATTTGTTCATCTCCTTCGTCGCCAGAGCACTGGTTTCTCAAGAGGAAGCTCAAAATATAGAGGAGTGACATTGCATAAATGTGGGAGATGGGAAGCTCGAATGGGCCAGCTATTAGGAAAGAAGTATATATATCTTGGACTATTTGATAGTGAGATAGAGGCTGCAAGGGCTGCTATCAAATTTAATGGAAGGGAAGCCGTCACAAATTTTAACCCAACCTTATTTGAAGACGAGGCTCTTAAGCAAGCTGGCAATCAAGATACCGATCAAAACCTTGATCTAAACTTGGCTATTGCTACACCTTCCCTATCTGAAGATCAATCAGAGAACACAAACAATGAGAATGGATTTGATTTTTGGCATGACCAAGAGGATATGCCTCATGATGGAAGACAAATGTCTGCGTCCACTTCTTTACTAAGGGCACAACCTTGTCATGACTCCTCCATGGTTTCTGGGTGCCATCCAATCTGGAAGAACACAAATTCTTTCTTTCCCAATTTGAAGGAAAGATCGTTGGAGAAGACGACGGTTAGTGATTCCACGCCAAATTGGAGTTGGCAAATCCAAGGTTCTTACAGTATGCCAATTCCAGTTCTGCATTTCTCTGCTGCAGCATCATCAGGATTCCCTTCGTGTGCATCAAAAACTACAACTCCCACAGACAATCAATCTTATTTTCCAGACACAGCGTCCCTCCACCTGGGTCTCGCAACTTCCAAAATATCCAGCTCTAGCCACATATCCACTTTCTACTGCAGGAGCTGA 1527 0.444 MLDLNLNAVCSDSDEMVGDHITQLSDSQIDNTNSSISFNSSVSVVNADTSNNTCDEDSCSYGDAFAHSFAILNDNQAASKASLQLQRDQQPQPDKQLHRNELAIEPFPATGVGQPNGVSADTPSATGLAMSSRKGCLEFFSKEVGCGGLMRQRILSQQLQQPRQQVKNSRRGPRPKSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAYAAARAYDRAAIKFRGMGADINFNISDYDEDMKQTNNFTKEEFVHLLRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEIEAARAAIKFNGREAVTNFNPTLFEDEALKQAGNQDTDQNLDLNLAIATPSLSEDQSENTNNENGFDFWHDQEDMPHDGRQMSASTSLLRAQPCHDSSMVSGCHPIWKNTNSFFPNLKERSLEKTTVSDSTPNWSWQIQGSYSMPIPVLHFSAAASSGFPSCASKTTTPTDNQSYFPDTASLHLGLATSKISSSSHISTFYCRS* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01654 508 Gene3D AP2/ERF domain 178 237 IPR036955 GO:0003700|GO:0006355
Pte18g01654 508 Gene3D AP2/ERF domain 270 325 IPR036955 GO:0003700|GO:0006355
Pte18g01654 508 MobiDBLite consensus disorder prediction 157 175 - -
Pte18g01654 508 ProSiteProfiles AP2/ERF domain profile. 271 324 IPR001471 GO:0003700|GO:0006355
Pte18g01654 508 ProSiteProfiles AP2/ERF domain profile. 179 235 IPR001471 GO:0003700|GO:0006355
Pte18g01654 508 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 152 387 - -
Pte18g01654 508 CDD AP2 178 237 IPR001471 GO:0003700|GO:0006355
Pte18g01654 508 SMART rav1_2 179 241 IPR001471 GO:0003700|GO:0006355
Pte18g01654 508 SMART rav1_2 271 331 IPR001471 GO:0003700|GO:0006355
Pte18g01654 508 FunFam AP2-like ethylene-responsive transcription factor 178 237 - -
Pte18g01654 508 CDD AP2 270 326 IPR001471 GO:0003700|GO:0006355
Pte18g01654 508 Pfam AP2 domain 270 314 IPR001471 GO:0003700|GO:0006355
Pte18g01654 508 Pfam AP2 domain 179 227 IPR001471 GO:0003700|GO:0006355
Pte18g01654 508 MobiDBLite consensus disorder prediction 157 181 - -
Pte18g01654 508 SUPERFAMILY DNA-binding domain 270 325 IPR016177 GO:0003677
Pte18g01654 508 SUPERFAMILY DNA-binding domain 178 237 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01654 Pte-Chr18 27882573 27885606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01654 161 363 AP2-EREBP Transcription Factor Family AT4G36920 71.154 5.61e-87 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Pte18g01654 AP2 5.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01654 K09284 - qsa:O6P43_006713 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01654 18 27882573 27885606 Pte15g01148 15 8685177 8688047 RCT
Pte18g01654 18 27882573 27885606 Pte18g01654 18 27882573 27885606 RCT