Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01648 ATGTTTGGAAAGGAGTTCTGCTGCTTGTTATGTTCCTTTAATGTAGCTTTTACTTTCTCCAGGAAAACTCGTGGAGCTGGAGCTGCTCGCAAGTTGAAGACCCATCGAAGGGAGGAAAGGTGGGCAGACAAGGCATACAAGAAGTCCCATCTTGGTAATGAATGGAAGAAACCTTTTGCTGGATCTTCCCATGCGAAGGGAATTGTTCTGGAAAAGATTGGTATTGAGGCAAAGCAGCCTAACTCTGCTATCCGTAAATGTGCAAGAGTACAACTTATTAAAAACGGCAAGAAGATTGCCGCGTTCGTCCCAAATGATGGTTGCTTAAATTACATTGAAGAGAATGACGAGGTCTTGATTGCCGGTTTTGGACGTAAGGGTCATGCTGTTGGTGATATTCCTGGAGTTCGATTCAAGGTTGTTAAGGTTTCAGGTGTCTCCCTTTTGGCACTTTTCAAGGAGAAAAAGGAGAAGCCAAGATCTTAA 486 0.4362 MFGKEFCCLLCSFNVAFTFSRKTRGAGAARKLKTHRREERWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01648 161 Pfam Ribosomal protein S12/S23 50 160 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pte18g01648 161 FunFam 40S ribosomal protein S23 44 161 - -
Pte18g01648 161 SUPERFAMILY Nucleic acid-binding proteins 40 159 IPR012340 -
Pte18g01648 161 ProSitePatterns Ribosomal protein S12 signature. 78 85 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pte18g01648 161 CDD Ribosomal_S23 45 158 IPR005680 GO:0003735|GO:0006412|GO:0015935
Pte18g01648 161 NCBIfam 30S ribosomal protein S12 26 160 IPR005680 GO:0003735|GO:0006412|GO:0015935
Pte18g01648 161 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 20 161 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pte18g01648 161 Gene3D - 44 161 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01648 Pte-Chr18 27828847 27830697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01648 22 162 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 94.326 7.78e-93 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01648 K02973 - pda:103702859 278.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01648 18 27828847 27830697 Pte18g01648 18 27828847 27830697 RCT
Pte18g01642 18 27760236 27762086 Pte18g01648 18 27828847 27830697 RCT
Pte15g00435 15 3077298 3079107 Pte18g01648 18 27828847 27830697 RCT
Pte18g01648 18 27828847 27830697 Pte15g00435 15 3077298 3079107 RCT