Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01642 ATGTTTGGAAAGGAGTTCTGCTGCTTGTTATGTTCCTTTAATGTAGCTTTTACTTTCTCCAGGAAAACTCGTGGAGCTGGAGCTGCTCGCAAGTTGAAGACCCATCGAAGGGAGGAAAGGTGGGCAGACAAGGCATACAAGAAGTCCCATCTTGGTAATGAATGGAAGAAACCTTTTGCTGGATCTTCCCATGCGAAGGGAATTGTTCTGGAAAAGATTGGTATTGAGGCAAAGCAGCCTAACTCTGCTATCCGTAAATGTGCAAGAGTACAACTTATTAAAAACGGCAAGAAGATTGCCGCGTTCGTCCCAAATGATGGTTGCTTAAATTACATTGAAGAGAATGACGAGGTCTTGATTGCCGGTTTTGGACGTAAGGGTCATGCTGTTGGTGATATTCCTGGAGTTCGATTCAAGGTTGTTAAGGTTTCAGGTGTCTCCCTTTTGGCACTTTTCAAGGAGAAAAAGGAGAAGCCAAGATCTTAA 486 0.4362 MFGKEFCCLLCSFNVAFTFSRKTRGAGAARKLKTHRREERWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01642 161 Pfam Ribosomal protein S12/S23 50 160 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pte18g01642 161 FunFam 40S ribosomal protein S23 44 161 - -
Pte18g01642 161 SUPERFAMILY Nucleic acid-binding proteins 40 159 IPR012340 -
Pte18g01642 161 ProSitePatterns Ribosomal protein S12 signature. 78 85 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pte18g01642 161 CDD Ribosomal_S23 45 158 IPR005680 GO:0003735|GO:0006412|GO:0015935
Pte18g01642 161 NCBIfam 30S ribosomal protein S12 26 160 IPR005680 GO:0003735|GO:0006412|GO:0015935
Pte18g01642 161 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 20 161 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pte18g01642 161 Gene3D - 44 161 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01642 Pte-Chr18 27760236 27762086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01642 22 162 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 94.326 7.78e-93 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01642 K02973 - pda:103702859 278.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01642 18 27760236 27762086 Pte18g01648 18 27828847 27830697 RCT
Pte18g01642 18 27760236 27762086 Pte18g01642 18 27760236 27762086 RCT
Pte18g01642 18 27760236 27762086 Pte15g00435 15 3077298 3079107 RCT