Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01630 ATGGGGCACAGACATTTATACAGCGCATCCCAAATGTTTGATGGTGACCACGAGCAAAATTGGAGTCCCATGCAAGTCAACCAACATTCTGTGGCTTCAGGTAGGAATAGTACTTCAGAGAATGGCTCCATGTTTTACCCCGTGGAATATATGTCTCTAGATGGGCTTACTGTTACTTCTCATTGGAATCCTGCACCAAGGTCAAATGTATATGGTTCGTCAAGTCTCACAGTTGATACGCCCCCACATAGGCCAGATCCATCTGGCTCTACTCATGACCATTTTCTGCATTCATCAACAGCTGGAGGCTTCTGTCGATTCTCTGAGAATTATCCTTTGCATACATCATCCGACCATGAGAGACAGAGTTTTCAAGTAGTTGAGGGTAGTTTTGTTGATCTGACAATGGGAGGTGGTAGGGGACCCCACAAACGCAAGAGTCCAGGAATTCCCCCTGTCTGTGAAAGGGGCAGTACAAGTAGATACTGCAATACTGAATCTAATCTTGATCTTCCTATGTGTTCAGAGTTAAATCAAGAGAAACAGAGTATAGATTCTCAATATTTGCCGTGGGATCAGAGTAACATAAATCTTCCTTATAGGAGTAACGGCATTTCAATCGGGAGCGATGGTTCTTTAAGGAATGTCAGAAGTCGTTCTGTAGTTGATCCCGAGTCGAGCCTTGCTACAACCAACCTGCCAAGTAATCGTTGGCACAGTTCCTATTCTATGAGTCATGCGTGTGATGAATCTGACACAGTGGATCTTTCAAGTCATGGTCTTAGCTCTGTAACTTGGGATTGGAGCCAAACGAACACATCTCCTGGTCGTGGGAGATTGTTATTTCCAGAATCATGCGGCTTTAATCATGAAACAAATCAATTCATTGTCGGAAGCAGTGCTAGTAATGCTTCTCTAGACATGGGGCCTCACCATCATGAATTTGCTTCAAGAAATCTAATTCTTCCTCAGAGTTATCATTGTAATTCAACCCAATCTGTGAGGGGAGTTCGAAGTAACTACTCTCAACGATCTAAACCAGCTTCTGGGGCTTCCTCAAGTTTGAGAATGGGACACGTTGTACCTCCAGATGATGGGTTGCATGCAATGGCTGTGAGTTACACTGCTAGGCATTCAAGGCCATTGTCCAGCAGTGGGTGGCATAGCAGTGGGAGAAATGGGAGGTCAGGAGTCGCTAATGAGAGATATCGATCATTGGCTGCTGCTGCTGCTTTGCACAATCGATTTTCATCCGAGGGCTTTATGATTGTTGATCGTGCGTCAGTCTATGGACCCAGAAGTGGTTTTGATCAACACAGAGACATGAGGATGGATATAGACAGCATGAGCTACGAGGAACTGCTGGCACTCGGAGAACAGATTGGGCATGTTAGCACAGGCTTATCTGAAGACCTAATATCAAAATGTTTAACTGAAATAATATATTGTTCTTCTGAGCAAAGTCAGGACGAAGGAAGTTGTGTTATCTGTCTGGAAGAATACGAAGACAGAGATGATGTGGGGGCGCTGAAAACTTGTGGTCACGATTATCATGTCAACTGCATTAGGAAGTGGCTATCTATGAAGAATGTCTGTCCCATTTGCAAAGTTTCTGTAGTTGATGATGTGAAGGGGAAATAA 1641 0.4412 MGHRHLYSASQMFDGDHEQNWSPMQVNQHSVASGRNSTSENGSMFYPVEYMSLDGLTVTSHWNPAPRSNVYGSSSLTVDTPPHRPDPSGSTHDHFLHSSTAGGFCRFSENYPLHTSSDHERQSFQVVEGSFVDLTMGGGRGPHKRKSPGIPPVCERGSTSRYCNTESNLDLPMCSELNQEKQSIDSQYLPWDQSNINLPYRSNGISIGSDGSLRNVRSRSVVDPESSLATTNLPSNRWHSSYSMSHACDESDTVDLSSHGLSSVTWDWSQTNTSPGRGRLLFPESCGFNHETNQFIVGSSASNASLDMGPHHHEFASRNLILPQSYHCNSTQSVRGVRSNYSQRSKPASGASSSLRMGHVVPPDDGLHAMAVSYTARHSRPLSSSGWHSSGRNGRSGVANERYRSLAAAAALHNRFSSEGFMIVDRASVYGPRSGFDQHRDMRMDIDSMSYEELLALGEQIGHVSTGLSEDLISKCLTEIIYCSSEQSQDEGSCVICLEEYEDRDDVGALKTCGHDYHVNCIRKWLSMKNVCPICKVSVVDDVKGK* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01630 546 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 459 541 IPR013083 -
Pte18g01630 546 SUPERFAMILY RING/U-box 484 540 - -
Pte18g01630 546 ProSiteProfiles Zinc finger RING-type profile. 494 536 IPR001841 -
Pte18g01630 546 SMART ring_2 494 535 IPR001841 -
Pte18g01630 546 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 459 540 - -
Pte18g01630 546 Pfam Ring finger domain 493 536 IPR001841 -
Pte18g01630 546 CDD RING-H2_RNF24-like 494 539 - -
Pte18g01630 546 MobiDBLite consensus disorder prediction 17 39 - -
Pte18g01630 546 MobiDBLite consensus disorder prediction 336 356 - -
Pte18g01630 546 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 108 539 IPR045191 GO:0061630
Pte18g01630 546 MobiDBLite consensus disorder prediction 336 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01630 Pte-Chr18 27702007 27707984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01630 1 543 C3H Transcription Factor Family AT2G37150 39.209 3.24e-94 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01630 - - qsa:O6P43_006681 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01630 18 27702007 27707984 Pte18g01630 18 27702007 27707984 RCT