Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01627 ATGCAAATGATGTCTGGTGACCCCTTTTCACTTCCAACTTCCATTGGAGGCTTTGCTCCAGAGCCAAACACAAACCCTAAACCTAAACCTAATTCCAGTTCAACTGCAAAGAAGAAGAGAAATCTACCAGGCACACCTGATCCAGATGCCGAGGTTATTGCTCTTTCACCAAAGACACTCATGGCTACAAATAGGTTTATCTGTGAAATTTGCAATAAGGGGTTCCAGAGAGATCAAAACCTTCAGCTTCATAGAAGGGGTCACAATCTGCCATGGAAATTAAAGCAAAGGACAAACAAAGAAGTCAAGAAGAAGGTCTATATCTGTCCTGAGAAAACTTGTGTACACCACGACCCTTCTAGAGCACTTGGTGACCTAACCGGGATAAAAAAACACTTCAGCCGGAAACATGGAGAGAAGAAATGGAAGTGTGACAAGTGCTCAAAGAAATATGCTGTTCAGTCTGATTGGAAAGCTCACACCAAGACATGTGGAACGCGAGAGTACAAGTGCGACTGTGGAACTCTCTTTTCCAGGAAGGACAGCTTCATCACTCACCGAGCTTTCTGCGATGCTTTGGCTGAAGAGAGTGCGAGACTAACGACAGTTACAGCTCCTAATGTTAATTTCCAGAACGAAGATCATACATCTAACATGTCACAAGTATACGCTGGTAAAGGAGTTCAAAACGTAGGCACGTCACAAGTATGCCCATCAGGTTGTCGTTCTGCAGATTTCAACGGAATCACCTGCAGTGGCGCCAACCTTCTTGGCGGAGATCAAACACGACCACGGTTGTCCCTTTGGTCGAACCGGACAAATAACCAGATTAGTCCAATGGAAATGATGGGAAGTTCCAATCTTTACGTGAGTTCAGCAGGTTTTCCTGAGATGACGCAAATGCAATCTGTCAATCTGTTTGGTGCTTCTAATTATGGAATCTCCTCTCAATTCGTGGGTGACAGTAATGCTTCGAATCCAACGACTGCATCCCTTTCCTTATCGCCATTGCCTAAGGAAGAAATTGGGAGCAAGGGAAGTTTGATCGAAAGTAGTCTATGCTCTATGTATACTGACTGTCAAAACAAGCAGTCAGCAAAGCCGGTGGCACCCATGTCAGCCACCGCGCTTTTACAGAAGGCAGCTCAGATGGGCTCTACGAGAAGCAATAGCTCCGTCTTCAGTGGCAGTTTTGGCGTGATGCTCTCATCGTCTTCTTCGCAAACGATAAGCTCCAGCAGTAATTTTCACCAAAGCCACGATCATGAGTTAGACCATGCACTTCAGAAGATGAAACAAACTGAGAATTTGGCTAACAAGAACACCCCCACTGCCGCTGCTTCAAACAGGACTGACCCTAAACCAAATGGTTTCGGTCAAGTTATGATGCATAACCAAAGGTTCAAGCTCAACAAACCCAGTTGA 1425 0.4519 MQMMSGDPFSLPTSIGGFAPEPNTNPKPKPNSSSTAKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTTVTAPNVNFQNEDHTSNMSQVYAGKGVQNVGTSQVCPSGCRSADFNGITCSGANLLGGDQTRPRLSLWSNRTNNQISPMEMMGSSNLYVSSAGFPEMTQMQSVNLFGASNYGISSQFVGDSNASNPTTASLSLSPLPKEEIGSKGSLIESSLCSMYTDCQNKQSAKPVAPMSATALLQKAAQMGSTRSNSSVFSGSFGVMLSSSSSQTISSSSNFHQSHDHELDHALQKMKQTENLANKNTPTAAASNRTDPKPNGFGQVMMHNQRFKLNKPS* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01627 474 MobiDBLite consensus disorder prediction 437 474 - -
Pte18g01627 474 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Pte18g01627 474 MobiDBLite consensus disorder prediction 1 51 - -
Pte18g01627 474 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Pte18g01627 474 FunFam protein indeterminate-domain 12-like 45 113 - -
Pte18g01627 474 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Pte18g01627 474 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Pte18g01627 474 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 28 430 IPR031140 -
Pte18g01627 474 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Pte18g01627 474 Gene3D Classic Zinc Finger 120 199 - -
Pte18g01627 474 MobiDBLite consensus disorder prediction 437 455 - -
Pte18g01627 474 SMART c2h2final6 66 88 IPR013087 -
Pte18g01627 474 SMART c2h2final6 107 137 IPR013087 -
Pte18g01627 474 SMART c2h2final6 142 162 IPR013087 -
Pte18g01627 474 Gene3D Classic Zinc Finger 44 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01627 Pte-Chr18 27675466 27678420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01627 1 230 IDZ Gene Family AT5G03150 66.926 1.21e-119 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte18g01627 zf-C2H2_jaz 6.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01627 K25870 - qsu:112005520 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01627 18 27675466 27678420 Pte18g01627 18 27675466 27678420 RCT