Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g01623 ATGTCAAAACGCATGGAAGTAGGAGCACCAAGCCAAGGTGAAATAACTGGCAAGGACTATCAAGACCCAGCGCCAGCACCACTCATAGATGCAGAGGAATTTACCAAATGGTCGTTCTACAGAGCCATCATTGCTGAATTCATAGCCACCCTCTTGTTCTTGTATATCACAGTTTTGACCGTGATTGGTTACAAAAGCCAGTCTGACACAAAGGCTGGCGGTGACCAGTGTGGCGGAGTGGGCCTCCTCGGCATCGCTTGGGCCTTCGGCGGTATGATCTTCATTCTCGTCTACTGCACTGCTGGTATCTCTGGAGGGCACATCAACCCGGCAGTAACATTTGGGTTGTTCTTGGCAAGGAAGGTGTCGCTGGTTAGAGCTGTAATGTACATGGTCGCTCAGTGCTTGGGGGCCGTATGTGGGTGTGGACTGGTGAAGGCCTTCCAGAGCGCTTATTACAAGAGGTATGGGGGTGGTGCCAACGAGCTTGCTGGTGGCTATAGCAAAGGCACTGGGTTGGGAGCTGAGATCATCGGTACCTTTGTTCTAGTCTATACCGTCTTCTCAGCTACGGATCCCAAGAGAAACGCCAGGGATTCGCATGTTCCTGTGTTGGCACCCCTTCCAATTGGGTTCGCCGTCTTCATGGTTCACCTTGCTACCATCCCCGTCACTGGCACTGGCATCAACCCTGCTAGAAGTTTTGGAGCTGCAGTGATATATAACGACAGGAAGGCCTGGAATGATCATTGGATTTTCTGGGTTGGACCTTTCATTGGTGCTGCCGTTGCCGCATTCTACCACCAGTATATACTGAGAGCTGCAGCCTTGAAAGCTGTGGGATCTTTCAGGAGCTCCTCCAACATATGA 870 0.5138 MSKRMEVGAPSQGEITGKDYQDPAPAPLIDAEEFTKWSFYRAIIAEFIATLLFLYITVLTVIGYKSQSDTKAGGDQCGGVGLLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAVCGCGLVKAFQSAYYKRYGGGANELAGGYSKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNDRKAWNDHWIFWVGPFIGAAVAAFYHQYILRAAALKAVGSFRSSSNI* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g01623 289 NCBIfam MIP family channel protein 45 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte18g01623 289 CDD MIP 41 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte18g01623 289 Gene3D Glycerol uptake facilitator protein. 26 289 IPR023271 -
Pte18g01623 289 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte18g01623 289 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte18g01623 289 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte18g01623 289 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte18g01623 289 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte18g01623 289 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte18g01623 289 Pfam Major intrinsic protein 33 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte18g01623 289 SUPERFAMILY Aquaporin-like 33 273 IPR023271 -
Pte18g01623 289 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Pte18g01623 289 FunFam Probable aquaporin PIP1-2 26 287 - -
Pte18g01623 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 10 278 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g01623 Pte-Chr18 27656203 27657568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g01623 18 290 Major Intrinsic Protein MIP AT2G37170 84.249 3.35e-176 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g01623 K09872 - cave:132192267 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01623 18 27656203 27657568 Pte15g01119 15 8381336 8383204 RCT
Pte18g01623 18 27656203 27657568 Pte18g01623 18 27656203 27657568 RCT
Pte18g01623 18 27656203 27657568 Pte9g00561 9 8220530 8223669 RCT
Pte15g01119 15 8381336 8383204 Pte18g01623 18 27656203 27657568 RCT
Pte18g01623 18 27656203 27657568 Pte17g00897 17 24077478 24078732 RCT
Pte18g01623 18 27656203 27657568 Pte15g00450 15 3181806 3182920 RCT